.gitignore
.pre-commit-config.yaml
LICENSE
MANIFEST.in
README.md
deploy.bat
pyproject.toml
setup.cfg
setup.py
tox.ini
.github/workflows/test_and_deploy.yml
docs/index.md
notebooks/Batched Deskew.ipynb
notebooks/Deskew_Save_recursive_function.ipynb
notebooks/Deskew_Save_simple.ipynb
notebooks/Using workflows in functions.ipynb
notebooks/Workflows in napari_lattice.ipynb
notebooks/deconvolution.ipynb
notebooks/deskew_cpu_gpu.ipynb
notebooks/deskewing_demo.ipynb
notebooks/inverse_deskewing.ipynb
notebooks/save_bigdataviewer_h5_affine_transform.ipynb
notebooks/saving_images_tiffile.ipynb
notebooks/test_notebook.ipynb
notebooks/tiling_images.ipynb
resources/LLSZ_window.png
resources/crop&deskew_active.png
resources/crop&deskew_initial.png
resources/deconvolution.png
resources/installation.jpg
resources/plugin_installation.png
resources/preview_deskew.png
resources/workflow.png
resources/cropping/cropping_explanation.jpg
resources/initialize/0_init_plugin.jpg
resources/initialize/1_init.jpg
resources/initialize/2_other_file_type_last_dim.jpg
resources/workflows/10_overview.jpg
resources/workflows/11_save_load_workflow.jpg
resources/workflows/12_workflow1.jpg
resources/workflows/13_workflow_preview.jpg
resources/workflows/14_workflow_crop_1.jpg
resources/workflows/14_workflow_crop_2.jpg
resources/workflows/15_workflow_save.jpg
resources/workflows/16_workflow_complete.jpg
resources/workflows/1_pyclesp_asst.jpg
resources/workflows/2_float_panel.jpg
resources/workflows/3_gaussian_blur.jpg
resources/workflows/4_threshold.jpg
resources/workflows/5_threshold.jpg
resources/workflows/6_labelling.jpg
resources/workflows/7_workflow_inspector.jpg
resources/workflows/8_voronoi_otsu.jpg
resources/workflows/9_workflow_inspector.jpg
resources/workflows/workflow_overview.jpg
resources/workflows/custom_workflows/cellpose1_workflow.jpg
resources/workflows/custom_workflows/regionprops_workflow1.jpg
sample_data/RBC_lattice.tif
sample_data/RBC_tiny.czi
sample_data/psfs/zeiss_simulated/488.czi
sample_data/psfs/zeiss_simulated/488.tif
sample_data/psfs/zeiss_simulated/561.czi
sample_data/psfs/zeiss_simulated/561.tif
sample_data/psfs/zeiss_simulated/640.czi
sample_data/psfs/zeiss_simulated/640.tif
sample_data/psfs/zeiss_simulated/description.txt
src/napari_lattice/__init__.py
src/napari_lattice/_dock_widget.py
src/napari_lattice/_reader.py
src/napari_lattice/config.py
src/napari_lattice/io.py
src/napari_lattice/llsz_core.py
src/napari_lattice/napari.yaml
src/napari_lattice/ui_core.py
src/napari_lattice/utils.py
src/napari_lattice.egg-info/PKG-INFO
src/napari_lattice.egg-info/SOURCES.txt
src/napari_lattice.egg-info/dependency_links.txt
src/napari_lattice.egg-info/entry_points.txt
src/napari_lattice.egg-info/requires.txt
src/napari_lattice.egg-info/top_level.txt
src/napari_lattice/_tests/__init__.py
src/napari_lattice/_tests/test_crop_deskew.py
src/napari_lattice/_tests/test_deskew.py
src/napari_lattice/_tests/test_dock_widget.py
src/napari_lattice/cmds/__init__.py
src/napari_lattice/cmds/__main__.py
workflow_examples/RBC_lattice.tif
workflow_examples/cellpose/cellpose_1.py
workflow_examples/cellpose/cellpose_1_single_channel.ipynb
workflow_examples/cellpose/cellpose_1_workflow.yml
workflow_examples/cellpose/cellpose_2.py
workflow_examples/cellpose/cellpose_2_multi_channel.ipynb
workflow_examples/cellpose/cellpose_2_workflow.yml
workflow_examples/regionprops_workflow/Segmentation_regionprops_multich_workflow.ipynb
workflow_examples/regionprops_workflow/Segmentation_regionprops_workflow.ipynb
workflow_examples/regionprops_workflow/lattice_measurement_0.csv
workflow_examples/regionprops_workflow/measure_regionprops.py
workflow_examples/regionprops_workflow/measure_regionprops_multich.py
workflow_examples/regionprops_workflow/regionprops_multich_workflow.yml
workflow_examples/regionprops_workflow/regionprops_workflow.yml