.gitattributes
.gitignore
.readthedocs.yml
DESCRIPTION.md
LICENSE
MANIFEST.in
README.md
codecov.yaml
conftest.py
environment.yml
requirements.txt
requirements_dev.txt
setup.cfg
setup.py
.github/workflows/badge.yml
.github/workflows/publish_pypi.yml
.github/workflows/tests.yml
bin/tigger-genotype.R
container/build.sh
container/dandelion_preprocess.py
container/environment.yml
container/environment_dev.yml
container/example_meta.csv
container/sc-dandelion.def
container/sc-dandelion_dev.def
container/sources.list
container/database/blast/human/human_BCR_C.fasta
container/database/blast/human/human_BCR_C.fasta.ndb
container/database/blast/human/human_BCR_C.fasta.nhr
container/database/blast/human/human_BCR_C.fasta.nin
container/database/blast/human/human_BCR_C.fasta.nog
container/database/blast/human/human_BCR_C.fasta.nos
container/database/blast/human/human_BCR_C.fasta.not
container/database/blast/human/human_BCR_C.fasta.nsq
container/database/blast/human/human_BCR_C.fasta.ntf
container/database/blast/human/human_BCR_C.fasta.nto
container/database/blast/mouse/mouse_BCR_C.fasta
container/database/blast/mouse/mouse_BCR_C.fasta.ndb
container/database/blast/mouse/mouse_BCR_C.fasta.nhr
container/database/blast/mouse/mouse_BCR_C.fasta.nin
container/database/blast/mouse/mouse_BCR_C.fasta.nog
container/database/blast/mouse/mouse_BCR_C.fasta.nos
container/database/blast/mouse/mouse_BCR_C.fasta.not
container/database/blast/mouse/mouse_BCR_C.fasta.nsq
container/database/blast/mouse/mouse_BCR_C.fasta.ntf
container/database/blast/mouse/mouse_BCR_C.fasta.nto
container/database/germlines/imgt/IMGT.yaml
container/database/germlines/imgt/human/constant/imgt_human_IGHC.fasta
container/database/germlines/imgt/human/constant/imgt_human_IGKC.fasta
container/database/germlines/imgt/human/constant/imgt_human_IGLC.fasta
container/database/germlines/imgt/human/constant/imgt_human_TRAC.fasta
container/database/germlines/imgt/human/constant/imgt_human_TRBC.fasta
container/database/germlines/imgt/human/constant/imgt_human_TRDC.fasta
container/database/germlines/imgt/human/constant/imgt_human_TRGC.fasta
container/database/germlines/imgt/human/leader/imgt_human_IGHL.fasta
container/database/germlines/imgt/human/leader/imgt_human_IGKL.fasta
container/database/germlines/imgt/human/leader/imgt_human_IGLL.fasta
container/database/germlines/imgt/human/leader/imgt_human_TRAL.fasta
container/database/germlines/imgt/human/leader/imgt_human_TRBL.fasta
container/database/germlines/imgt/human/leader/imgt_human_TRDL.fasta
container/database/germlines/imgt/human/leader/imgt_human_TRGL.fasta
container/database/germlines/imgt/human/leader_vexon/imgt_lv_human_IGHV.fasta
container/database/germlines/imgt/human/leader_vexon/imgt_lv_human_IGKV.fasta
container/database/germlines/imgt/human/leader_vexon/imgt_lv_human_IGLV.fasta
container/database/germlines/imgt/human/leader_vexon/imgt_lv_human_TRAV.fasta
container/database/germlines/imgt/human/leader_vexon/imgt_lv_human_TRBV.fasta
container/database/germlines/imgt/human/leader_vexon/imgt_lv_human_TRDV.fasta
container/database/germlines/imgt/human/leader_vexon/imgt_lv_human_TRGV.fasta
container/database/germlines/imgt/human/vdj/imgt_human_IGHD.fasta
container/database/germlines/imgt/human/vdj/imgt_human_IGHJ.fasta
container/database/germlines/imgt/human/vdj/imgt_human_IGHV.fasta
container/database/germlines/imgt/human/vdj/imgt_human_IGKJ.fasta
container/database/germlines/imgt/human/vdj/imgt_human_IGKV.fasta
container/database/germlines/imgt/human/vdj/imgt_human_IGLJ.fasta
container/database/germlines/imgt/human/vdj/imgt_human_IGLV.fasta
container/database/germlines/imgt/human/vdj/imgt_human_TRAJ.fasta
container/database/germlines/imgt/human/vdj/imgt_human_TRAV.fasta
container/database/germlines/imgt/human/vdj/imgt_human_TRBD.fasta
container/database/germlines/imgt/human/vdj/imgt_human_TRBJ.fasta
container/database/germlines/imgt/human/vdj/imgt_human_TRBV.fasta
container/database/germlines/imgt/human/vdj/imgt_human_TRDD.fasta
container/database/germlines/imgt/human/vdj/imgt_human_TRDJ.fasta
container/database/germlines/imgt/human/vdj/imgt_human_TRDV.fasta
container/database/germlines/imgt/human/vdj/imgt_human_TRGJ.fasta
container/database/germlines/imgt/human/vdj/imgt_human_TRGV.fasta
container/database/germlines/imgt/human/vdj_aa/imgt_aa_human_IGHV.fasta
container/database/germlines/imgt/human/vdj_aa/imgt_aa_human_IGKV.fasta
container/database/germlines/imgt/human/vdj_aa/imgt_aa_human_IGLV.fasta
container/database/germlines/imgt/human/vdj_aa/imgt_aa_human_TRAV.fasta
container/database/germlines/imgt/human/vdj_aa/imgt_aa_human_TRBV.fasta
container/database/germlines/imgt/human/vdj_aa/imgt_aa_human_TRDV.fasta
container/database/germlines/imgt/human/vdj_aa/imgt_aa_human_TRGV.fasta
container/database/germlines/imgt/mouse/constant/imgt_mouse_IGHC.fasta
container/database/germlines/imgt/mouse/constant/imgt_mouse_IGKC.fasta
container/database/germlines/imgt/mouse/constant/imgt_mouse_IGLC.fasta
container/database/germlines/imgt/mouse/constant/imgt_mouse_TRAC.fasta
container/database/germlines/imgt/mouse/constant/imgt_mouse_TRBC.fasta
container/database/germlines/imgt/mouse/constant/imgt_mouse_TRDC.fasta
container/database/germlines/imgt/mouse/constant/imgt_mouse_TRGC.fasta
container/database/germlines/imgt/mouse/leader/imgt_mouse_IGHL.fasta
container/database/germlines/imgt/mouse/leader/imgt_mouse_IGKL.fasta
container/database/germlines/imgt/mouse/leader/imgt_mouse_IGLL.fasta
container/database/germlines/imgt/mouse/leader/imgt_mouse_TRAL.fasta
container/database/germlines/imgt/mouse/leader/imgt_mouse_TRBL.fasta
container/database/germlines/imgt/mouse/leader/imgt_mouse_TRDL.fasta
container/database/germlines/imgt/mouse/leader/imgt_mouse_TRGL.fasta
container/database/germlines/imgt/mouse/leader_vexon/imgt_lv_mouse_IGHV.fasta
container/database/germlines/imgt/mouse/leader_vexon/imgt_lv_mouse_IGKV.fasta
container/database/germlines/imgt/mouse/leader_vexon/imgt_lv_mouse_IGLV.fasta
container/database/germlines/imgt/mouse/leader_vexon/imgt_lv_mouse_TRAV.fasta
container/database/germlines/imgt/mouse/leader_vexon/imgt_lv_mouse_TRBV.fasta
container/database/germlines/imgt/mouse/leader_vexon/imgt_lv_mouse_TRDV.fasta
container/database/germlines/imgt/mouse/leader_vexon/imgt_lv_mouse_TRGV.fasta
container/database/germlines/imgt/mouse/vdj/imgt_mouse_IGHD.fasta
container/database/germlines/imgt/mouse/vdj/imgt_mouse_IGHJ.fasta
container/database/germlines/imgt/mouse/vdj/imgt_mouse_IGHV.fasta
container/database/germlines/imgt/mouse/vdj/imgt_mouse_IGKJ.fasta
container/database/germlines/imgt/mouse/vdj/imgt_mouse_IGKV.fasta
container/database/germlines/imgt/mouse/vdj/imgt_mouse_IGLJ.fasta
container/database/germlines/imgt/mouse/vdj/imgt_mouse_IGLV.fasta
container/database/germlines/imgt/mouse/vdj/imgt_mouse_TRAJ.fasta
container/database/germlines/imgt/mouse/vdj/imgt_mouse_TRAV.fasta
container/database/germlines/imgt/mouse/vdj/imgt_mouse_TRBD.fasta
container/database/germlines/imgt/mouse/vdj/imgt_mouse_TRBJ.fasta
container/database/germlines/imgt/mouse/vdj/imgt_mouse_TRBV.fasta
container/database/germlines/imgt/mouse/vdj/imgt_mouse_TRDD.fasta
container/database/germlines/imgt/mouse/vdj/imgt_mouse_TRDJ.fasta
container/database/germlines/imgt/mouse/vdj/imgt_mouse_TRDV.fasta
container/database/germlines/imgt/mouse/vdj/imgt_mouse_TRGJ.fasta
container/database/germlines/imgt/mouse/vdj/imgt_mouse_TRGV.fasta
container/database/germlines/imgt/mouse/vdj_aa/imgt_aa_mouse_IGHV.fasta
container/database/germlines/imgt/mouse/vdj_aa/imgt_aa_mouse_IGKV.fasta
container/database/germlines/imgt/mouse/vdj_aa/imgt_aa_mouse_IGLV.fasta
container/database/germlines/imgt/mouse/vdj_aa/imgt_aa_mouse_TRAV.fasta
container/database/germlines/imgt/mouse/vdj_aa/imgt_aa_mouse_TRBV.fasta
container/database/germlines/imgt/mouse/vdj_aa/imgt_aa_mouse_TRDV.fasta
container/database/germlines/imgt/mouse/vdj_aa/imgt_aa_mouse_TRGV.fasta
container/database/germlines/imgt/rabbit/constant/imgt_rabbit_IGHC.fasta
container/database/germlines/imgt/rabbit/constant/imgt_rabbit_IGKC.fasta
container/database/germlines/imgt/rabbit/constant/imgt_rabbit_IGLC.fasta
container/database/germlines/imgt/rabbit/constant/imgt_rabbit_TRAC.fasta
container/database/germlines/imgt/rabbit/constant/imgt_rabbit_TRBC.fasta
container/database/germlines/imgt/rabbit/constant/imgt_rabbit_TRDC.fasta
container/database/germlines/imgt/rabbit/constant/imgt_rabbit_TRGC.fasta
container/database/germlines/imgt/rabbit/leader/imgt_rabbit_IGHL.fasta
container/database/germlines/imgt/rabbit/leader/imgt_rabbit_IGKL.fasta
container/database/germlines/imgt/rabbit/leader/imgt_rabbit_IGLL.fasta
container/database/germlines/imgt/rabbit/leader/imgt_rabbit_TRAL.fasta
container/database/germlines/imgt/rabbit/leader/imgt_rabbit_TRBL.fasta
container/database/germlines/imgt/rabbit/leader/imgt_rabbit_TRDL.fasta
container/database/germlines/imgt/rabbit/leader/imgt_rabbit_TRGL.fasta
container/database/germlines/imgt/rabbit/leader_vexon/imgt_lv_rabbit_IGHV.fasta
container/database/germlines/imgt/rabbit/leader_vexon/imgt_lv_rabbit_IGKV.fasta
container/database/germlines/imgt/rabbit/leader_vexon/imgt_lv_rabbit_IGLV.fasta
container/database/germlines/imgt/rabbit/leader_vexon/imgt_lv_rabbit_TRAV.fasta
container/database/germlines/imgt/rabbit/leader_vexon/imgt_lv_rabbit_TRBV.fasta
container/database/germlines/imgt/rabbit/leader_vexon/imgt_lv_rabbit_TRDV.fasta
container/database/germlines/imgt/rabbit/leader_vexon/imgt_lv_rabbit_TRGV.fasta
container/database/germlines/imgt/rabbit/vdj/imgt_rabbit_IGHD.fasta
container/database/germlines/imgt/rabbit/vdj/imgt_rabbit_IGHJ.fasta
container/database/germlines/imgt/rabbit/vdj/imgt_rabbit_IGHV.fasta
container/database/germlines/imgt/rabbit/vdj/imgt_rabbit_IGKJ.fasta
container/database/germlines/imgt/rabbit/vdj/imgt_rabbit_IGKV.fasta
container/database/germlines/imgt/rabbit/vdj/imgt_rabbit_IGLJ.fasta
container/database/germlines/imgt/rabbit/vdj/imgt_rabbit_IGLV.fasta
container/database/germlines/imgt/rabbit/vdj/imgt_rabbit_TRAJ.fasta
container/database/germlines/imgt/rabbit/vdj/imgt_rabbit_TRAV.fasta
container/database/germlines/imgt/rabbit/vdj/imgt_rabbit_TRBD.fasta
container/database/germlines/imgt/rabbit/vdj/imgt_rabbit_TRBJ.fasta
container/database/germlines/imgt/rabbit/vdj/imgt_rabbit_TRBV.fasta
container/database/germlines/imgt/rabbit/vdj/imgt_rabbit_TRDD.fasta
container/database/germlines/imgt/rabbit/vdj/imgt_rabbit_TRDJ.fasta
container/database/germlines/imgt/rabbit/vdj/imgt_rabbit_TRDV.fasta
container/database/germlines/imgt/rabbit/vdj/imgt_rabbit_TRGJ.fasta
container/database/germlines/imgt/rabbit/vdj/imgt_rabbit_TRGV.fasta
container/database/germlines/imgt/rabbit/vdj_aa/imgt_aa_rabbit_IGHV.fasta
container/database/germlines/imgt/rabbit/vdj_aa/imgt_aa_rabbit_IGKV.fasta
container/database/germlines/imgt/rabbit/vdj_aa/imgt_aa_rabbit_IGLV.fasta
container/database/germlines/imgt/rabbit/vdj_aa/imgt_aa_rabbit_TRAV.fasta
container/database/germlines/imgt/rabbit/vdj_aa/imgt_aa_rabbit_TRBV.fasta
container/database/germlines/imgt/rabbit/vdj_aa/imgt_aa_rabbit_TRDV.fasta
container/database/germlines/imgt/rabbit/vdj_aa/imgt_aa_rabbit_TRGV.fasta
container/database/germlines/imgt/rat/constant/imgt_rat_IGHC.fasta
container/database/germlines/imgt/rat/constant/imgt_rat_IGKC.fasta
container/database/germlines/imgt/rat/constant/imgt_rat_IGLC.fasta
container/database/germlines/imgt/rat/constant/imgt_rat_TRAC.fasta
container/database/germlines/imgt/rat/constant/imgt_rat_TRBC.fasta
container/database/germlines/imgt/rat/constant/imgt_rat_TRDC.fasta
container/database/germlines/imgt/rat/constant/imgt_rat_TRGC.fasta
container/database/germlines/imgt/rat/leader/imgt_rat_IGHL.fasta
container/database/germlines/imgt/rat/leader/imgt_rat_IGKL.fasta
container/database/germlines/imgt/rat/leader/imgt_rat_IGLL.fasta
container/database/germlines/imgt/rat/leader/imgt_rat_TRAL.fasta
container/database/germlines/imgt/rat/leader/imgt_rat_TRBL.fasta
container/database/germlines/imgt/rat/leader/imgt_rat_TRDL.fasta
container/database/germlines/imgt/rat/leader/imgt_rat_TRGL.fasta
container/database/germlines/imgt/rat/leader_vexon/imgt_lv_rat_IGHV.fasta
container/database/germlines/imgt/rat/leader_vexon/imgt_lv_rat_IGKV.fasta
container/database/germlines/imgt/rat/leader_vexon/imgt_lv_rat_IGLV.fasta
container/database/germlines/imgt/rat/leader_vexon/imgt_lv_rat_TRAV.fasta
container/database/germlines/imgt/rat/leader_vexon/imgt_lv_rat_TRBV.fasta
container/database/germlines/imgt/rat/leader_vexon/imgt_lv_rat_TRDV.fasta
container/database/germlines/imgt/rat/leader_vexon/imgt_lv_rat_TRGV.fasta
container/database/germlines/imgt/rat/vdj/imgt_rat_IGHD.fasta
container/database/germlines/imgt/rat/vdj/imgt_rat_IGHJ.fasta
container/database/germlines/imgt/rat/vdj/imgt_rat_IGHV.fasta
container/database/germlines/imgt/rat/vdj/imgt_rat_IGKJ.fasta
container/database/germlines/imgt/rat/vdj/imgt_rat_IGKV.fasta
container/database/germlines/imgt/rat/vdj/imgt_rat_IGLJ.fasta
container/database/germlines/imgt/rat/vdj/imgt_rat_IGLV.fasta
container/database/germlines/imgt/rat/vdj/imgt_rat_TRAJ.fasta
container/database/germlines/imgt/rat/vdj/imgt_rat_TRAV.fasta
container/database/germlines/imgt/rat/vdj/imgt_rat_TRBD.fasta
container/database/germlines/imgt/rat/vdj/imgt_rat_TRBJ.fasta
container/database/germlines/imgt/rat/vdj/imgt_rat_TRBV.fasta
container/database/germlines/imgt/rat/vdj/imgt_rat_TRDD.fasta
container/database/germlines/imgt/rat/vdj/imgt_rat_TRDJ.fasta
container/database/germlines/imgt/rat/vdj/imgt_rat_TRDV.fasta
container/database/germlines/imgt/rat/vdj/imgt_rat_TRGJ.fasta
container/database/germlines/imgt/rat/vdj/imgt_rat_TRGV.fasta
container/database/germlines/imgt/rat/vdj_aa/imgt_aa_rat_IGHV.fasta
container/database/germlines/imgt/rat/vdj_aa/imgt_aa_rat_IGKV.fasta
container/database/germlines/imgt/rat/vdj_aa/imgt_aa_rat_IGLV.fasta
container/database/germlines/imgt/rat/vdj_aa/imgt_aa_rat_TRAV.fasta
container/database/germlines/imgt/rat/vdj_aa/imgt_aa_rat_TRBV.fasta
container/database/germlines/imgt/rat/vdj_aa/imgt_aa_rat_TRDV.fasta
container/database/germlines/imgt/rat/vdj_aa/imgt_aa_rat_TRGV.fasta
container/database/germlines/imgt/rhesus_monkey/constant/imgt_rhesus_monkey_IGHC.fasta
container/database/germlines/imgt/rhesus_monkey/constant/imgt_rhesus_monkey_IGKC.fasta
container/database/germlines/imgt/rhesus_monkey/constant/imgt_rhesus_monkey_IGLC.fasta
container/database/germlines/imgt/rhesus_monkey/constant/imgt_rhesus_monkey_TRAC.fasta
container/database/germlines/imgt/rhesus_monkey/constant/imgt_rhesus_monkey_TRBC.fasta
container/database/germlines/imgt/rhesus_monkey/constant/imgt_rhesus_monkey_TRDC.fasta
container/database/germlines/imgt/rhesus_monkey/constant/imgt_rhesus_monkey_TRGC.fasta
container/database/germlines/imgt/rhesus_monkey/leader/imgt_rhesus_monkey_IGHL.fasta
container/database/germlines/imgt/rhesus_monkey/leader/imgt_rhesus_monkey_IGKL.fasta
container/database/germlines/imgt/rhesus_monkey/leader/imgt_rhesus_monkey_IGLL.fasta
container/database/germlines/imgt/rhesus_monkey/leader/imgt_rhesus_monkey_TRAL.fasta
container/database/germlines/imgt/rhesus_monkey/leader/imgt_rhesus_monkey_TRBL.fasta
container/database/germlines/imgt/rhesus_monkey/leader/imgt_rhesus_monkey_TRDL.fasta
container/database/germlines/imgt/rhesus_monkey/leader/imgt_rhesus_monkey_TRGL.fasta
container/database/germlines/imgt/rhesus_monkey/leader_vexon/imgt_lv_rhesus_monkey_IGHV.fasta
container/database/germlines/imgt/rhesus_monkey/leader_vexon/imgt_lv_rhesus_monkey_IGKV.fasta
container/database/germlines/imgt/rhesus_monkey/leader_vexon/imgt_lv_rhesus_monkey_IGLV.fasta
container/database/germlines/imgt/rhesus_monkey/leader_vexon/imgt_lv_rhesus_monkey_TRAV.fasta
container/database/germlines/imgt/rhesus_monkey/leader_vexon/imgt_lv_rhesus_monkey_TRBV.fasta
container/database/germlines/imgt/rhesus_monkey/leader_vexon/imgt_lv_rhesus_monkey_TRDV.fasta
container/database/germlines/imgt/rhesus_monkey/leader_vexon/imgt_lv_rhesus_monkey_TRGV.fasta
container/database/germlines/imgt/rhesus_monkey/vdj/imgt_rhesus_monkey_IGHD.fasta
container/database/germlines/imgt/rhesus_monkey/vdj/imgt_rhesus_monkey_IGHJ.fasta
container/database/germlines/imgt/rhesus_monkey/vdj/imgt_rhesus_monkey_IGHV.fasta
container/database/germlines/imgt/rhesus_monkey/vdj/imgt_rhesus_monkey_IGKJ.fasta
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container/database/germlines/imgt/rhesus_monkey/vdj/imgt_rhesus_monkey_IGLJ.fasta
container/database/germlines/imgt/rhesus_monkey/vdj/imgt_rhesus_monkey_IGLV.fasta
container/database/germlines/imgt/rhesus_monkey/vdj/imgt_rhesus_monkey_TRAJ.fasta
container/database/germlines/imgt/rhesus_monkey/vdj/imgt_rhesus_monkey_TRAV.fasta
container/database/germlines/imgt/rhesus_monkey/vdj/imgt_rhesus_monkey_TRBD.fasta
container/database/germlines/imgt/rhesus_monkey/vdj/imgt_rhesus_monkey_TRBJ.fasta
container/database/germlines/imgt/rhesus_monkey/vdj/imgt_rhesus_monkey_TRBV.fasta
container/database/germlines/imgt/rhesus_monkey/vdj/imgt_rhesus_monkey_TRDD.fasta
container/database/germlines/imgt/rhesus_monkey/vdj/imgt_rhesus_monkey_TRDJ.fasta
container/database/germlines/imgt/rhesus_monkey/vdj/imgt_rhesus_monkey_TRDV.fasta
container/database/germlines/imgt/rhesus_monkey/vdj/imgt_rhesus_monkey_TRGJ.fasta
container/database/germlines/imgt/rhesus_monkey/vdj/imgt_rhesus_monkey_TRGV.fasta
container/database/germlines/imgt/rhesus_monkey/vdj_aa/imgt_aa_rhesus_monkey_IGHV.fasta
container/database/germlines/imgt/rhesus_monkey/vdj_aa/imgt_aa_rhesus_monkey_IGKV.fasta
container/database/germlines/imgt/rhesus_monkey/vdj_aa/imgt_aa_rhesus_monkey_IGLV.fasta
container/database/germlines/imgt/rhesus_monkey/vdj_aa/imgt_aa_rhesus_monkey_TRAV.fasta
container/database/germlines/imgt/rhesus_monkey/vdj_aa/imgt_aa_rhesus_monkey_TRBV.fasta
container/database/germlines/imgt/rhesus_monkey/vdj_aa/imgt_aa_rhesus_monkey_TRDV.fasta
container/database/germlines/imgt/rhesus_monkey/vdj_aa/imgt_aa_rhesus_monkey_TRGV.fasta
container/database/igblast/database/imgt_aa_human_ig_v.pdb
container/database/igblast/database/imgt_aa_human_ig_v.phr
container/database/igblast/database/imgt_aa_human_ig_v.pin
container/database/igblast/database/imgt_aa_human_ig_v.pog
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container/database/igblast/database/imgt_aa_human_ig_v.pot
container/database/igblast/database/imgt_aa_human_ig_v.psq
container/database/igblast/database/imgt_aa_human_ig_v.ptf
container/database/igblast/database/imgt_aa_human_ig_v.pto
container/database/igblast/database/imgt_aa_human_tr_v.pdb
container/database/igblast/database/imgt_aa_human_tr_v.phr
container/database/igblast/database/imgt_aa_human_tr_v.pin
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container/database/igblast/database/imgt_aa_human_tr_v.pot
container/database/igblast/database/imgt_aa_human_tr_v.psq
container/database/igblast/database/imgt_aa_human_tr_v.ptf
container/database/igblast/database/imgt_aa_human_tr_v.pto
container/database/igblast/database/imgt_aa_mouse_ig_v.pdb
container/database/igblast/database/imgt_aa_mouse_ig_v.phr
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