COPYING.txt
README.md
setup.py
deepblast/__init__.py
deepblast/alignment.py
deepblast/constants.py
deepblast/embedding.py
deepblast/language_model.py
deepblast/losses.py
deepblast/metrics.py
deepblast/nw.py
deepblast/nw_cuda.py
deepblast/ops.py
deepblast/score.py
deepblast/sim.py
deepblast/sw.py
deepblast/sw_cuda.py
deepblast/trainer.py
deepblast/utils.py
deepblast.egg-info/PKG-INFO
deepblast.egg-info/SOURCES.txt
deepblast.egg-info/dependency_links.txt
deepblast.egg-info/requires.txt
deepblast.egg-info/top_level.txt
deepblast/dataset/__init__.py
deepblast/dataset/alphabet.py
deepblast/dataset/dataset.py
deepblast/dataset/parse_blast.py
deepblast/dataset/parse_fatcat.py
deepblast/dataset/parse_hmmer.py
deepblast/dataset/parse_mali.py
deepblast/dataset/parse_pdb.py
deepblast/dataset/parse_tm_align.py
deepblast/dataset/tm_align.py
deepblast/dataset/utils.py
deepblast/pretrained_models/lstm2x.pt
scripts/deepblast-evaluate
scripts/deepblast-mali-align
scripts/deepblast-search
scripts/deepblast-tensorboard2csv
scripts/deepblast-train
scripts/hmm-simulate