vrprot

• VRProt
  • vrprot.alphafold_db_parser module
    • AlphafoldDBParser
      • AlphafoldDBParser.WD
      • AlphafoldDBParser.alphafold_ver
      • AlphafoldDBParser.batch_size
      • AlphafoldDBParser.check_dirs()
      • AlphafoldDBParser.chimerax
      • AlphafoldDBParser.chimerax_process()
      • AlphafoldDBParser.clear_default_dirs()
      • AlphafoldDBParser.convert_glbs()
      • AlphafoldDBParser.db
      • AlphafoldDBParser.execute_fetch()
      • AlphafoldDBParser.execute_from_bulk()
      • AlphafoldDBParser.execute_from_object()
      • AlphafoldDBParser.execute_local()
      • AlphafoldDBParser.fetch_pdb()
      • AlphafoldDBParser.fetch_pipeline()
      • AlphafoldDBParser.filter_already_processed()
      • AlphafoldDBParser.gen_maps()
      • AlphafoldDBParser.get_filename()
      • AlphafoldDBParser.img_size
      • AlphafoldDBParser.init_dirs()
      • AlphafoldDBParser.init_structures_dict()
      • AlphafoldDBParser.keep_temp
      • AlphafoldDBParser.log
      • AlphafoldDBParser.not_fetched
      • AlphafoldDBParser.output_exists()
      • AlphafoldDBParser.overview_file
      • AlphafoldDBParser.overwrite
      • AlphafoldDBParser.pdb_pipeline()
      • AlphafoldDBParser.processing
      • AlphafoldDBParser.proteins_from_dir()
      • AlphafoldDBParser.proteins_from_list()
      • AlphafoldDBParser.sample_pcd()
      • AlphafoldDBParser.set_alphafold_version()
      • AlphafoldDBParser.set_batch_size()
      • AlphafoldDBParser.set_chimerax()
      • AlphafoldDBParser.set_coloring_mode()
      • AlphafoldDBParser.set_database()
      • AlphafoldDBParser.set_dirs()
      • AlphafoldDBParser.set_img_size()
      • AlphafoldDBParser.set_keep_tmp()
      • AlphafoldDBParser.set_version_from_filenames()
      • AlphafoldDBParser.structures
      • AlphafoldDBParser.update_existence()
      • AlphafoldDBParser.update_output_dir()
      • AlphafoldDBParser.write_scale()
  • vrprot.argument_parser module
    • argument_parser()
  • vrprot.batcher module
    • batch()
  • vrprot.exceptions module
    • ChimeraXException
    • StructureNotFoundError
  • vrprot.overview_util module
    • add_protein_structure_from_scales()
    • get_overview()
    • get_scale()
    • init_overview()
    • main()
    • read_overview()
    • write_overview()
    • write_scale()
  • vrprot.pointcloud2map_8bit module
    • gen_filennames()
    • pcd_to_png()
    • run_batch()
  • vrprot.sample_pointcloud module
    • run_for_batch()
    • sample_pcd()
  • vrprot.util module
    • batch()
    • call_ChimeraX_bundle()
    • combine_fractions()
    • convert_glb_to_ply()
    • fetch_pdb()
    • fetch_pdb_from_alphafold()
    • fetch_pdb_from_rcsb()
    • remove_dirs()
    • run_chimerax_coloring_script()
    • search_for_chimerax()
  • Module contents