Metadata-Version: 2.1
Name: feather_creator
Version: 0.0.3
Summary: motif-TG .feather files creation and motifs-TF mapping from a list
Home-page: UNKNOWN
Author: Timothée Frouté and Sergio Peignier
Author-email: sergio.peignier@insa-lyon.fr
License: UNKNOWN
Description: # feather_creator
        
        Allows creation of .feather file to use in the pyscenic pipeline from motifs and gene sequences.
        
        ### Dependencies
        
        + `pip install numpy` version 1.19.5
        + `pip install biopython` version 1.73
        + `pip install pyarrow` version 0.16.0
        + `pip install pandas`
        + `pip install tqdm` 
        
        using pip environment
        + `python3 -m venv feather_creator_env`
        + `source feather_creator_env/bin/activate`
        + `python3 -m pip install -r requirements.txt`
        
        ### Installation:
        
        TODO : ajouter sur pypi
        `pip install feather_creator`
        
        ### Tutorials:
        
        
        
        ### Material
        
        This module relies on the `iRegulon` dataset, which has also been used for `i-cistarget`.
        
           http://iregulon.aertslab.org/collections.html#motifcolldownload
        
        Direct download link for the motif collection:
        
           https://resources.aertslab.org/papers/iregulon/motifColl-10k-all-public.tar.gz
        
        (Janky and Verfaillie et al., PLoS Comp Biol 2014) 
        
        Necessary motif-TF association file:
        
           https://resources.aertslab.org/cistarget/motif2tf/
        
        
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: GNU General Public License (GPL)
Classifier: Operating System :: OS Independent
Description-Content-Type: text/markdown
