changeset:   219:0f9d18314701
tag:         tip
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Mon Apr 26 14:21:28 2010 +0100
summary:     bug fix

changeset:   218:b4872ae89b40
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Mon Apr 26 12:48:58 2010 +0100
summary:     added handling of missing data

changeset:   217:87e82ee46d2c
parent:      216:5c8f70bedc07
parent:      215:d2ebed05336b
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Apr 23 10:33:06 2010 +0100
summary:     merge

changeset:   216:5c8f70bedc07
parent:      211:a45c914ade00
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Apr 23 10:26:29 2010 +0100
summary:     refactored to directly import numpy and scipy classes and functions that were used in inner loops of MCMC module

changeset:   215:d2ebed05336b
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Apr 16 17:18:08 2010 +0100
summary:     improved rmsd function

changeset:   214:859e63d089e9
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Tue Apr 13 16:35:17 2010 +0100
summary:     updated docs

changeset:   213:e5bf2b4052f8
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Tue Apr 13 16:32:43 2010 +0100
summary:     bug fixes

changeset:   212:690cd82d2b74
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Tue Apr 13 15:46:01 2010 +0100
summary:     implemented delayed rejection

changeset:   211:a45c914ade00
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Apr 09 16:35:45 2010 +0100
summary:     bugfix

changeset:   210:120810830592
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Apr 09 16:07:32 2010 +0100
summary:     updated docs

changeset:   209:1a886a50f849
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Apr 09 16:06:17 2010 +0100
summary:     Added tag v0.4 for changeset fd15f4bc719d

changeset:   208:fd15f4bc719d
tag:         v0.4
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Apr 09 15:05:58 2010 +0100
summary:     implemented removal of outlier chains

changeset:   207:8f7af534917c
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Apr 09 14:04:53 2010 +0100
summary:     updated sphinx docs

changeset:   206:bbc2a1e3711e
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Apr 09 12:41:25 2010 +0100
summary:     Dream sampler running, but not yet complete. Still needs further tuning

changeset:   205:11c74eae960c
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Thu Apr 08 14:59:10 2010 +0100
summary:     bugfix

changeset:   204:6c0a50c8cab8
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Thu Apr 08 14:57:41 2010 +0100
summary:     implemented DIC

changeset:   203:118edd520f51
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Mon Apr 05 15:57:22 2010 +0100
summary:     improved the implementation of the DREAM MCMC sampler. Still not finished.

changeset:   202:c95441b9a292
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Mon Apr 05 14:04:41 2010 +0100
summary:     refactored MCMC to move _propose and _accept methods to Sampler base class

changeset:   201:21271056274b
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Mon Apr 05 13:36:20 2010 +0100
summary:     fixed minor bug

changeset:   200:c2f1012e5f3e
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Mon Apr 05 13:34:42 2010 +0100
summary:     refactored MCMC.py to unify management of process Pools.

changeset:   199:3dcbdb59a7a7
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Wed Mar 31 14:10:35 2010 +0100
summary:     add more files

changeset:   198:faa863739206
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Wed Mar 31 14:08:32 2010 +0100
summary:     updated sphinx docs

changeset:   197:30cccace904a
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Tue Mar 30 16:30:23 2010 +0100
summary:     updated docs

changeset:   196:a4e5d5e9e9e6
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Tue Mar 30 14:22:56 2010 +0100
summary:     fixed some bugs and updated documentation

changeset:   195:ff5b8b64b3c6
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Tue Mar 30 12:07:49 2010 +0100
summary:     added theta limits to FitModel Optimization contraints when method == 'oo'

changeset:   194:143e291ff857
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Mon Mar 29 18:00:25 2010 +0100
summary:     implemented DREAM's chain evolution method

changeset:   193:e595e43cfe87
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Mon Mar 29 12:31:24 2010 +0100
summary:     added thinning to MCMC chain history plots

changeset:   192:1639637256b7
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Mon Mar 29 11:28:05 2010 +0100
summary:     changed the startting port on xmlrpcserver

changeset:   191:5635d36720f8
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Sat Mar 27 13:04:34 2010 +0000
summary:     bug

changeset:   190:c5012e4e20a9
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Sat Mar 27 13:01:47 2010 +0000
summary:     fixed more bugs in the multi chain MCMC and optimization function

changeset:   189:44a60ee5c9f4
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Mar 26 16:32:24 2010 +0000
summary:     implemented multiple chains

changeset:   188:7592d82b2721
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Mar 26 11:00:17 2010 +0000
summary:     fixed formatting bug on violing plot

changeset:   187:653fb38fc481
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Thu Mar 25 15:41:08 2010 +0000
summary:     added support for expanding windows inference

changeset:   186:97a1d809670f
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Thu Mar 18 14:19:03 2010 +0000
summary:     updated docs

changeset:   185:29046038a3eb
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Thu Mar 18 14:14:16 2010 +0000
summary:     updated docs

changeset:   184:f29ffcd1dc0b
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Thu Mar 18 13:52:58 2010 +0000
summary:     updated docs

changeset:   183:5dd071012d70
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Thu Mar 18 13:51:35 2010 +0000
summary:     fixed examples

changeset:   182:d1444654cb41
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Wed Mar 17 16:36:12 2010 +0000
summary:     updated docs

changeset:   181:d76465d86b80
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Wed Mar 17 16:35:26 2010 +0000
summary:     fixed some bugs in database output of FitModel

changeset:   180:d6ae8f1573f1
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Wed Mar 17 16:08:29 2010 +0000
summary:     improved output to database

changeset:   179:96e2bfbfbffc
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Tue Mar 16 13:59:21 2010 +0000
summary:     bumped version to 0.3.25

changeset:   178:8d226bb2be2f
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Tue Mar 16 10:04:36 2010 +0000
summary:     fixed bug in monitor plot

changeset:   177:804e31202c55
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Tue Mar 16 09:35:03 2010 +0000
summary:     improved monitor plots in FitModel

changeset:   176:7e8f5143d34e
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Thu Mar 11 14:33:10 2010 +0000
summary:     added reporting of remaining time to go to fitmodel

changeset:   175:aed06853e8f9
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Thu Mar 11 14:17:37 2010 +0000
summary:     updated docs

changeset:   174:3832500510d5
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Thu Mar 11 14:16:20 2010 +0000
summary:     fixed plotting bugs

changeset:   173:a7438f423b0a
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Thu Mar 11 12:51:39 2010 +0000
summary:     fixed a bug

changeset:   172:5d029e7dd7b5
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Thu Mar 11 12:48:40 2010 +0000
summary:     modified model calls to always a list and a *tuple

changeset:   171:4dc1748540cb
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Thu Mar 11 12:35:14 2010 +0000
summary:     fixed bugs in plotting

changeset:   170:67384cb877c8
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Wed Mar 03 16:49:04 2010 +0000
summary:     change all monitoring plots to xmlrpc servers. better performance.

changeset:   169:77ced1e7f4b2
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Wed Mar 03 12:33:47 2010 +0000
summary:     fixed some bugs in the save_to_db method

changeset:   168:f6dcba157cfd
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Tue Mar 02 14:00:03 2010 +0000
summary:     improved plotlines function

changeset:   167:b15680ddb41e
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Mon Mar 01 13:23:04 2010 +0000
summary:     improved optimize method and added a possibility of plotting the optimized solution.

changeset:   166:d749f49b824a
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Feb 26 13:37:08 2010 +0000
summary:     fixed scaling bugs in violin plot scaling

changeset:   165:bd3ea21e680f
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Feb 26 12:36:58 2010 +0000
summary:     implemented a factory function for xmlrpc plot servers

changeset:   164:27385a55aa8e
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Feb 26 11:08:04 2010 +0000
summary:     added date support for x axis on violin and cumulative predicted plots

changeset:   163:2c3ec6ff6d2e
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Wed Feb 10 15:11:37 2010 +0000
summary:     updated docs

changeset:   162:45142d95e398
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Wed Feb 10 15:10:45 2010 +0000
summary:     fixed some bugs

changeset:   161:d3c7554e081d
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Tue Feb 09 17:13:26 2010 +0000
summary:     implemented a db storage of results in the Fitmodel Class

changeset:   160:201c88bb4e1e
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Sun Jan 31 12:57:39 2010 +0000
summary:     nada

changeset:   159:a8fe48840348
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Sun Jan 31 12:56:25 2010 +0000
summary:     improved sphinx docs

changeset:   158:16bc3ffbc51c
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Sat Jan 30 22:10:37 2010 +0000
summary:     upg docs

changeset:   157:ab672964c625
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Sat Jan 30 22:08:06 2010 +0000
summary:     improved sphinx docs

changeset:   156:8afbfb8e01e7
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Sat Jan 30 14:44:30 2010 +0000
summary:     improved sphinx documentation

changeset:   155:e7dcbb93675b
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Sat Jan 30 14:25:39 2010 +0000
summary:     added doc files

changeset:   154:b33c6ef0ec85
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Sat Jan 30 13:57:23 2010 +0000
summary:     bumped up version number

changeset:   153:9b84faf99401
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Jan 29 14:24:25 2010 +0000
summary:     fixed plotting bugs

changeset:   152:a4cefb1a5c75
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Jan 29 13:35:42 2010 +0000
summary:     improved Metropolis sampler

changeset:   151:ce64210042b8
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Tue Jan 26 14:55:18 2010 +0000
summary:     updated documentation

changeset:   150:6bf5ff5493ea
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Tue Jan 26 14:44:10 2010 +0000
summary:     minor bug fix

changeset:   149:ecd5f56001e0
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Tue Jan 26 14:02:43 2010 +0000
summary:     fixed bug in the FitModel class. Tested with all methods. working.

changeset:   148:b02adf0a2780
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Mon Jan 25 12:33:44 2010 +0000
summary:     fixed some bugs in plotting routines

changeset:   147:ad43e19a119d
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Mon Jan 25 11:21:31 2010 +0000
summary:     fixed bug in gnuplot plotting (made it compatible with latest gnuplot)

changeset:   146:61420eea5b73
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Mon Jan 25 09:41:38 2010 +0000
summary:     update Docs

changeset:   145:d85550a52955
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Wed Jan 20 09:56:10 2010 +0000
summary:     fixed bugs in MCMC module and optimized all methods in Melding module

changeset:   144:3deaadafed3f
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Mon Jan 11 10:34:22 2010 +0000
summary:     started docs latex build

changeset:   143:4b6e55de0a2c
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Jan 08 15:17:42 2010 +0000
summary:     added initial sphinx build

changeset:   142:f189c3ec120d
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Jan 08 15:17:06 2010 +0000
summary:     created logo

changeset:   141:09af556eb0f3
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Jan 08 12:24:29 2010 +0000
summary:     started Sphinx documentation tree. Still empty.

changeset:   140:2f4db2b7544b
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Thu Jan 07 16:45:30 2010 +0000
summary:     fixed some bugs

changeset:   139:56d4db004489
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Thu Jan 07 16:09:51 2010 +0000
summary:     finished implementation of FitModel class im Melding.py. implemented some tests for it as well.

changeset:   138:a2bb76c4cc62
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Wed Jan 06 18:00:47 2010 +0000
summary:     added some tests to Melding.py

changeset:   137:4515d291aa72
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Wed Jan 06 10:43:23 2010 +0000
summary:     fixed docs

changeset:   136:f264a16c12a6
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Mon Jan 04 16:57:20 2010 +0000
summary:     started test for fitModel

changeset:   135:d56b575bfbe1
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Mon Jan 04 16:45:48 2010 +0000
summary:     started implementing a model fit class in Melding

changeset:   134:90669ea6a570
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Dec 11 16:21:11 2009 +0000
summary:     updated docs

changeset:   133:b88523be48b8
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Dec 11 16:12:51 2009 +0000
summary:     bumped up version on setup.py

changeset:   132:fc1bb280e149
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Dec 11 16:11:19 2009 +0000
summary:     implemented fitting based on MCMC for the Melding module. A combination of Metropolis-hastings proposals

changeset:   131:ab1f5a2b4d9e
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Wed Dec 09 11:25:36 2009 +0000
summary:     Added MCMC module stub

changeset:   130:8d53750dddde
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Dec 04 15:44:20 2009 +0000
summary:     improved lhs to stop returning infs in samples

changeset:   129:14f119aaacb4
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Thu Dec 03 16:14:04 2009 +0000
summary:     bug fix

changeset:   128:4f53bca24c72
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Thu Dec 03 16:07:30 2009 +0000
summary:     fixed bug in lhs and tested

changeset:   127:10fda6e0044d
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Thu Dec 03 15:46:39 2009 +0000
summary:     extended lhs to support multivariate sampling with correlation structure.

changeset:   126:4582f346492a
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Tue Dec 01 12:38:06 2009 +0000
summary:     started implementation of the conjugate prior module

changeset:   125:349ce24da943
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Mon Nov 30 17:00:11 2009 +0000
summary:     bugfix

changeset:   124:48df0063fd55
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Mon Nov 30 16:45:19 2009 +0000
summary:     fixed bug in gillespie.py

changeset:   123:d1f384cfa9f3
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Nov 27 12:13:17 2009 +0000
summary:     improved uniform likelihood methods

changeset:   122:a0261f0933ea
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Wed Nov 25 12:26:32 2009 +0000
summary:     added Uniform log-likelihood function in like.py

changeset:   121:dbe51ac97cf2
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Tue Nov 24 16:01:17 2009 +0000
summary:     improved documentation and minor refactoring in bvariables module.

changeset:   120:73765928bf69
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Mon Nov 02 12:42:00 2009 +0000
summary:     improved cgillespie performance

changeset:   119:17d96bef40d2
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Oct 30 16:35:37 2009 +0000
summary:     update cython version of gillespie

changeset:   118:3ac2336378dc
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Oct 30 11:22:44 2009 +0000
summary:     minor updates on examples

changeset:   117:bae8bf9201fc
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Oct 30 11:10:22 2009 +0000
summary:     added example files

changeset:   116:1f11c73faadc
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Oct 30 10:09:55 2009 +0000
summary:     updated docs

changeset:   115:cb7130569508
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Oct 30 10:07:05 2009 +0000
summary:     update docs

changeset:   114:64ba0fd48def
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Oct 30 10:06:23 2009 +0000
summary:     bug fixes

changeset:   113:1336071c65ac
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Wed Oct 28 16:15:09 2009 +0000
summary:     changed parameter name in the sir method of Meld class from tau to variance.

changeset:   112:5a1d796e271f
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Thu Oct 22 14:03:36 2009 +0100
summary:     minor fixes

changeset:   111:1f6bbb51dfd8
parent:      110:115118fe26fc
parent:      104:6b784d986098
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Thu Oct 22 12:32:18 2009 +0100
summary:     m

changeset:   110:115118fe26fc
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Thu Oct 22 12:31:36 2009 +0100
summary:     mXs

changeset:   109:9b708aba1434
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Thu Oct 22 12:29:50 2009 +0100
summary:     m

changeset:   108:48fc03f9b24e
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Thu Oct 22 12:21:36 2009 +0100
summary:     bug fix

changeset:   107:7e61be7362ca
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Thu Oct 22 11:54:31 2009 +0100
summary:     rename

changeset:   106:1dc8f2a19132
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Thu Oct 22 11:53:35 2009 +0100
summary:     new minor release

changeset:   105:3140785e4b29
parent:      93:3556f77a1ded
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Thu Oct 22 11:44:08 2009 +0100
summary:     removed build directory from mercurial control

changeset:   104:6b784d986098
user:        fccoelho@localhost.localdomain
date:        Mon Oct 12 17:41:53 2009 +0100
summary:     fixed some bugs in the __str__ of _BayesVar

changeset:   103:5927ed654a02
user:        fccoelho@localhost.localdomain
date:        Mon Oct 12 17:18:29 2009 +0100
summary:     started to implement the ascii histogram  as the __str__ of _bayesvar

changeset:   102:a16954b875af
user:        fccoelho@localhost.localdomain
date:        Mon Oct 12 16:48:40 2009 +0100
summary:     added ascii histogram generator

changeset:   101:8176e5c96e36
user:        fccoelho@localhost.localdomain
date:        Mon Oct 12 13:39:21 2009 +0100
summary:     removed 2.6 only syntax to make it compatible with python 2.5

changeset:   100:07249c66a346
user:        fccoelho@localhost.localdomain
date:        Tue Oct 06 15:13:11 2009 +0100
summary:     improved documentatio of SDE example.py

changeset:   99:9df56f90283f
user:        fccoelho@localhost.localdomain
date:        Tue Sep 29 12:00:32 2009 +0100
summary:     m

changeset:   98:3b9b5e50cf86
user:        fccoelho@localhost.localdomain
date:        Tue Sep 29 11:57:16 2009 +0100
summary:     bug fix

changeset:   97:09f1a0bf426b
user:        fccoelho@localhost.localdomain
date:        Tue Sep 29 11:33:56 2009 +0100
summary:     Rolled back migration to Distribute due to lack of support in Sage.

changeset:   96:b3cfeec1db2d
user:        fccoelho@localhost.localdomain
date:        Tue Sep 29 10:04:21 2009 +0100
summary:     moved from setuptools to distribute

changeset:   95:ca2ff82a0beb
user:        fccoelho@localhost.localdomain
date:        Wed Sep 23 14:32:35 2009 +0100
summary:     bumped up minor version

changeset:   94:ef520be751bc
user:        fccoelho@localhost.localdomain
date:        Wed Sep 23 14:29:12 2009 +0100
summary:     added import check for gnuplot in gillespie.py

changeset:   93:3556f77a1ded
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Fri Sep 11 10:40:40 2009 +0100
summary:     fixed bug in setThetafromData which gave an error after receiving a constant vector as sample.

changeset:   92:a5cf8b4221b0
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Tue Sep 01 13:59:42 2009 +0100
summary:     improved ABCrun

changeset:   91:116efdfb8c43
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Thu Aug 27 21:54:06 2009 +0100
summary:     minor bug fixes

changeset:   90:3c3bc9e4f67e
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Mon Aug 24 17:35:56 2009 +0100
summary:     fixed import bug

changeset:   89:50a5c577b92e
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Mon Aug 24 17:13:46 2009 +0100
summary:     removed strict dependency on Gnuplot

changeset:   88:8c2f44ec3db8
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Tue Jul 28 14:31:15 2009 +0100
summary:     added tests with pythoscope to the root of the BIP package

changeset:   87:2698e00242e0
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Tue Jul 28 13:53:17 2009 +0100
summary:     update docs

changeset:   86:d5eb945fe801
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Mon Jul 27 23:43:08 2009 +0100
summary:     added realtime visualization capabilities to Meld Class. Untested

changeset:   85:58bd94c98584
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Mon Jul 27 15:47:58 2009 +0100
summary:     fixed bug in SDE

changeset:   84:a3205047e4bd
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Wed Jul 15 16:07:11 2009 +0100
summary:     update docs

changeset:   83:b01be54fea10
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Wed Jul 15 15:57:18 2009 +0100
summary:     cleaned melding.py to get rid of old implementation.

changeset:   82:7bee9530dac6
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Wed Jul 15 14:49:43 2009 +0100
summary:     added psyco check

changeset:   81:04be7339dbad
user:        Flavio Codeco Coelho <fccoelho@gmail.com>
date:        Wed Jul 15 14:33:08 2009 +0100
summary:     cleaned imports

changeset:   80:f15566b679a1
user:        fccoelho
date:        Thu Apr 23 10:48:39 2009 +0000
summary:     added some type enforcing for sage compatibility

changeset:   79:6a5bdaa95e5d
user:        fccoelho
date:        Sat Apr 18 11:56:04 2009 +0000
summary:     removed builtin names 'vars' and 'round' from gillespie.py

changeset:   78:02fbaef1ca18
user:        fccoelho
date:        Fri Apr 17 11:36:19 2009 +0000
summary:     Parallelized GilespieSSA Stochatic diferential equation solver

changeset:   77:f2d2044e893e
user:        fccoelho
date:        Tue Apr 07 14:40:33 2009 +0000
summary:     fixed bug in melding.py

changeset:   76:321ee3718c51
user:        fccoelho
date:        Mon Mar 30 10:50:34 2009 +0000
summary:     Made it compatible with multiprocessing in 2.6 and new versions of python

changeset:   75:d4b090e92c27
user:        fccoelho
date:        Thu Mar 26 16:55:15 2009 +0000
summary:     minor bugfixes

changeset:   74:926391757fc7
user:        fccoelho
date:        Thu Mar 26 16:12:26 2009 +0000
summary:     improved information output during runtime

changeset:   73:20bb0ca80511
user:        fccoelho
date:        Thu Mar 19 17:43:22 2009 +0000
summary:     bug fixes

changeset:   72:da858ef252bb
user:        fccoelho
date:        Thu Mar 19 13:10:02 2009 +0000
summary:     updated epydoc documentation

changeset:   71:712693e7f928
user:        fccoelho
date:        Thu Mar 19 13:04:37 2009 +0000
summary:     Added limit enforcing in setPhiFrom Data and setThetaFromData in melding.py

changeset:   70:bc143d59432a
user:        fccoelho
date:        Tue Mar 17 10:10:45 2009 +0000
summary:     removed import of visualization module from Melding.py

changeset:   69:d42c4ead15c1
user:        fccoelho
date:        Thu Feb 26 16:51:04 2009 +0000
summary:     some fixes

changeset:   68:1a7f41ecfa2b
user:        fccoelho
date:        Thu Feb 26 11:38:25 2009 +0000
summary:     SIR returns 1 if successful 0 if not; allowing for retries in the case of zero weights.

changeset:   67:77dd4616888d
user:        fccoelho
date:        Thu Feb 26 11:35:28 2009 +0000
summary:     Added real-time vizualization module based on Gnuplot

changeset:   66:6d9c9c2d5d81
user:        fccoelho
date:        Thu Feb 19 18:34:19 2009 +0000
summary:     minor changes

changeset:   65:f2dec7ae5b6a
user:        fccoelho
date:        Wed Feb 18 14:43:45 2009 +0000
summary:     Now sir method returns 0 when it is does not complete successfully allowing for retries.

changeset:   64:37d60eaf1efb
user:        fccoelho
date:        Wed Jan 21 15:07:22 2009 +0000
summary:     paralelized get posteriors

changeset:   63:026a1abefeca
user:        fccoelho
date:        Tue Jan 20 17:24:54 2009 +0000
summary:     paralelized likelihood calculations

changeset:   62:6eee5e5eb29b
user:        fccoelho
date:        Tue Jan 20 16:32:04 2009 +0000
summary:     improved performance or the parallel runs

changeset:   61:f15d26411d2f
user:        fccoelho
date:        Tue Jan 20 11:24:14 2009 +0000
summary:     bugs fixed. new sir with likelihoods for timeseries working.

changeset:   60:4b3fd6e21a44
user:        fccoelho
date:        Wed Jan 07 11:40:33 2009 +0000
summary:     fixed bugs in Melding.py

changeset:   59:80cbb024b9cc
user:        fccoelho
date:        Fri Dec 19 17:08:03 2008 +0000
summary:     fixed basic fit method on Meld class

changeset:   58:a40b78bfbe56
user:        fccoelho
date:        Wed Dec 17 10:58:56 2008 +0000
summary:     fixed bugs in setup.py

changeset:   57:28dc4ff7cadc
user:        fccoelho
date:        Tue Dec 16 17:02:27 2008 +0000
summary:     updated documentation for the package

changeset:   56:3621ffc33100
user:        fccoelho
date:        Tue Dec 16 17:00:27 2008 +0000
summary:     Implemented lhsFromDensity on lhs module. added tests for it but they are still empty

changeset:   55:40d3e01e65a2
user:        fccoelho
date:        Tue Dec 16 13:04:33 2008 +0000
summary:     fixed bugs on Melding

changeset:   54:3bc6ecf56418
user:        fccoelho
date:        Thu Dec 11 17:09:57 2008 +0000
summary:     Fixed bugs in Meld Class

changeset:   53:16a8d76bdf46
user:        fccoelho
date:        Thu Dec 11 17:02:35 2008 +0000
summary:     improved documentation

changeset:   52:a8a7b3dd00ba
user:        fccoelho
date:        Thu Dec 11 16:16:27 2008 +0000
summary:     lhs sampling function modified to accept sample size as a shape tuple or an integer.

changeset:   51:e47e1641fe49
user:        fccoelho
date:        Wed Dec 10 17:28:54 2008 +0000
summary:     bug fixes

changeset:   50:fc0aee71c0ac
user:        fccoelho
date:        Wed Dec 10 11:50:50 2008 +0000
summary:     Started tests for the melding module

changeset:   49:2652b702ffaf
user:        fccoelho
date:        Fri Dec 05 08:04:55 2008 +0000
summary:     fixed bug in LHS

changeset:   48:3989f072dac2
user:        fccoelho
date:        Thu Dec 04 17:33:34 2008 +0000
summary:     Still testing and improving ABC implementation.

changeset:   47:259b9b86d2a0
user:        fccoelho
date:        Wed Dec 03 20:14:38 2008 +0000
summary:     fixed some bugs on the ABC method of Melding

changeset:   46:9218ff93e3b3
user:        fccoelho
date:        Wed Dec 03 16:39:55 2008 +0000
summary:     First implementation of Approximate Bayesian Computation versio of bayesian Melding done!

changeset:   45:e081726badd6
user:        fccoelho
date:        Mon Dec 01 19:15:02 2008 +0000
summary:     Added support for parallel processing on SMP machine to the melding module

changeset:   44:21efc4e6966a
user:        fccoelho
date:        Mon Dec 01 14:27:31 2008 +0000
summary:     fixed bugs in Meld class

changeset:   43:f9b127c9f527
user:        fccoelho
date:        Fri Nov 28 17:31:55 2008 +0000
summary:     Improved Melding module to allow sequential inferences

changeset:   42:90f637ea6871
user:        fccoelho
date:        Fri Nov 28 11:35:15 2008 +0000
summary:     renames Bayes module to bvariables

changeset:   41:e8b02f46dedd
user:        fccoelho
date:        Fri Nov 28 11:34:35 2008 +0000
summary:     renames Bayes module to bvariables

changeset:   40:51eacf97be71
user:        fccoelho
date:        Fri Nov 28 11:31:15 2008 +0000
summary:     improved documentation

changeset:   39:5c2b0ef45463
user:        fccoelho
date:        Fri Nov 28 10:53:07 2008 +0000
summary:     Refactoring of the Melding module  complete, Meld class tested with single compartment model.

changeset:   38:a7356cbcec60
user:        fccoelho
date:        Thu Nov 27 17:41:16 2008 +0000
summary:     fix

changeset:   37:947481560cdf
user:        fccoelho
date:        Wed Nov 26 17:14:44 2008 +0000
summary:     improved doc formatting

changeset:   36:cac7bd968924
user:        fccoelho
date:        Wed Nov 26 16:58:03 2008 +0000
summary:     added documentation

changeset:   35:23de57238cd0
user:        fccoelho
date:        Wed Nov 26 16:34:21 2008 +0000

changeset:   34:78fb30008209
user:        fccoelho
date:        Wed Nov 26 16:31:57 2008 +0000
summary:     added help files

changeset:   33:f3231486a1c3
user:        fccoelho
date:        Wed Nov 26 16:25:20 2008 +0000
summary:     Added initial epydoc documentation

changeset:   32:2345d5632f0f
user:        fccoelho
date:        Wed Nov 26 16:16:42 2008 +0000

changeset:   31:c795402cefa9
user:        fccoelho
date:        Wed Nov 26 15:33:50 2008 +0000
summary:     fix

changeset:   30:b18b57d01a42
user:        fccoelho
date:        Wed Nov 26 15:29:25 2008 +0000
summary:     fix

changeset:   29:11d80a68657d
user:        fccoelho
date:        Wed Nov 26 15:06:47 2008 +0000
summary:     fix

changeset:   28:33bde733445b
user:        fccoelho
date:        Wed Nov 26 14:34:01 2008 +0000
summary:     refactoring

changeset:   27:46600aab2479
user:        fccoelho
date:        Wed Nov 26 14:08:37 2008 +0000
summary:     added master package BIP

changeset:   26:9357585f37e3
user:        fccoelho
date:        Wed Nov 26 11:49:27 2008 +0000
summary:     added more tests to the like.py functions. Still missing tests for weibull and Categorical Likelihood.

changeset:   25:db63ed208bde
user:        fccoelho
date:        Mon Nov 24 17:09:44 2008 +0000
summary:     added more tests

changeset:   24:455bcb38638e
user:        fccoelho
date:        Mon Nov 24 16:47:34 2008 +0000
summary:     added more tests

changeset:   23:82217921be04
user:        fccoelho
date:        Fri Nov 21 19:36:25 2008 +0000
summary:     started the setup.py

changeset:   22:a22851b0f32a
user:        fccoelho
date:        Fri Nov 21 19:23:48 2008 +0000
summary:     Extended tests on the like module

changeset:   21:7d04901d6550
user:        fccoelho
date:        Thu Nov 20 11:18:55 2008 +0000
summary:     added more tests

changeset:   20:643bf990b143
user:        fccoelho
date:        Thu Nov 20 10:46:00 2008 +0000
summary:     added more tests

changeset:   19:c063c965b4d1
user:        fccoelho
date:        Wed Nov 19 15:15:01 2008 +0000
summary:     Began refactoring of the Melding module

changeset:   18:567d9b3bcb77
user:        fccoelho
date:        Tue Nov 18 15:39:29 2008 +0000
summary:     Added Melding and lhs module

changeset:   17:3d57f359b2c2
user:        fccoelho
date:        Sat Nov 15 17:32:44 2008 +0000
summary:     expanded tests

changeset:   16:7ed2084674a8
user:        fccoelho
date:        Sat Nov 15 17:07:23 2008 +0000
summary:     added tests to like module

changeset:   15:aa5c5de9dd0e
user:        fccoelho
date:        Sat Nov 15 16:42:14 2008 +0000
summary:     added tests to like module

changeset:   14:31cac68c415f
user:        fccoelho
date:        Sat Nov 15 16:35:23 2008 +0000
summary:     Added package to solve Stochastic differential equations

changeset:   13:40e6ac805d0a
user:        fccoelho
date:        Fri Nov 14 18:07:11 2008 +0000
summary:     Condensation algorithm working correctly. After some bugfixes

changeset:   12:9982dd6b5b3e
user:        fccoelho
date:        Fri Nov 14 15:26:53 2008 +0000
summary:     Added visualization to the Condensation module.

changeset:   11:0c848c74dda3
user:        fccoelho
date:        Fri Nov 14 14:31:35 2008 +0000
summary:     Implementation of the simple SMC Condensation algorithm done

changeset:   10:845f73281a41
user:        fccoelho
date:        Fri Nov 14 09:59:42 2008 +0000
summary:     update

changeset:   9:32674e61a814
user:        fccoelho
date:        Tue Oct 07 14:09:35 2008 +0000

changeset:   8:4731cdf1816c
user:        fccoelho
date:        Tue Oct 07 14:09:25 2008 +0000

changeset:   7:8804d0edc233
user:        fccoelho
date:        Tue Oct 07 14:08:50 2008 +0000
summary:     improved docstrings;

changeset:   6:a03b50971929
user:        fccoelho
date:        Mon Oct 06 11:40:11 2008 +0000
summary:     updated figure.

changeset:   5:55cbebeab1c3
user:        fccoelho
date:        Thu May 29 19:23:11 2008 +0000
summary:     translated some docstrings

changeset:   4:e0417f334a4e
user:        fccoelho
date:        Mon May 12 19:46:13 2008 +0000
summary:     changed attribute range to rang to avoid collision with reserver keyword

changeset:   3:9ef8e7da7045
user:        fccoelho
date:        Mon May 12 18:40:17 2008 +0000
summary:     fixed project files

changeset:   2:940b4941b220
user:        fccoelho
date:        Mon May 12 18:22:36 2008 +0000
summary:     Added factory functions to Bayes.py

changeset:   1:b066b9aa524e
user:        fccoelho
date:        Mon May 12 17:17:16 2008 +0000
summary:     new project started

changeset:   0:cc9cb4017834
user:        unknown
date:        Mon May 12 12:56:51 2008 +0000
summary:     Initial directory structure.

