.coveragerc
.dockerignore
.gitignore
.isort.cfg
CITATION
CODE_OF_CONDUCT.rst
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
Makefile
README.rst
app.yml.sample
dev-requirements.txt
drmaa_dev.txt
local_env.sh.sample
mypy.ini
pytest.ini
requirements.txt
run.bat
run.sh
run_client_tests.py
server.ini.sample
setup.cfg
setup.py
setup_venv.sh
tox.ini
.ci/setup_tests.sh
.github/workflows/galaxy_framework.yaml
.github/workflows/pulsar.yaml
docker/coexecutor/Dockerfile
docker/coexecutor/Makefile
docker/cvmfs/Dockerfile
docker/cvmfs/README.md
docker/testing/Dockerfile
docker/testing/container_env.sh
docker/testing/tox_wrapper.sh
docs/Makefile
docs/conduct.rst
docs/conf.py
docs/configure.rst
docs/containers.rst
docs/contributing.rst
docs/developing.rst
docs/galaxy_conf.rst
docs/galaxy_with_rabbitmq_conf.rst
docs/gen_scripts_doc.py
docs/gx_aws_deployment.plantuml.svg
docs/gx_aws_deployment.plantuml.txt
docs/gx_k8s_deployment.plantuml.svg
docs/gx_k8s_deployment.plantuml.txt
docs/history.rst
docs/image.Makefile
docs/index.rst
docs/install.rst
docs/job_managers.rst
docs/job_managers_old.rst
docs/make.bat
docs/modules.rst
docs/old_job_managers.ini.sample
docs/organization.rst
docs/plantuml_options.txt
docs/plantuml_style.txt
docs/public_server.rst
docs/pulsar.cache.rst
docs/pulsar.client.rst
docs/pulsar.client.staging.rst
docs/pulsar.client.test.rst
docs/pulsar.client.transport.rst
docs/pulsar.managers.base.rst
docs/pulsar.managers.rst
docs/pulsar.managers.staging.rst
docs/pulsar.managers.util.cli.job.rst
docs/pulsar.managers.util.cli.rst
docs/pulsar.managers.util.cli.shell.rst
docs/pulsar.managers.util.condor.rst
docs/pulsar.managers.util.drmaa.rst
docs/pulsar.managers.util.job_script.rst
docs/pulsar.managers.util.rst
docs/pulsar.mesos.rst
docs/pulsar.messaging.rst
docs/pulsar.rst
docs/pulsar.scripts.rst
docs/pulsar.tools.rst
docs/pulsar.util.pastescript.rst
docs/pulsar.util.rst
docs/pulsar.web.rst
docs/pulsar_k8s_coexecution_deployment.plantuml.svg
docs/pulsar_k8s_coexecution_deployment.plantuml.txt
docs/pulsar_k8s_coexecution_mq_deployment.plantuml.svg
docs/pulsar_k8s_coexecution_mq_deployment.plantuml.txt
docs/pulsar_k8s_deployment.plantuml.svg
docs/pulsar_k8s_deployment.plantuml.txt
docs/pulsar_k8s_mq_deployment.plantuml.svg
docs/pulsar_k8s_mq_deployment.plantuml.txt
docs/pulsar_tes_coexecution_deployment.plantuml.svg
docs/pulsar_tes_coexecution_deployment.plantuml.txt
docs/pulsar_tes_coexecution_mq_deployment.plantuml.svg
docs/pulsar_tes_coexecution_mq_deployment.plantuml.txt
docs/pulsar_tes_deployment.plantuml.svg
docs/pulsar_tes_deployment.plantuml.txt
docs/pulsar_tes_mq_deployment.plantuml.svg
docs/pulsar_tes_mq_deployment.plantuml.txt
docs/readme.rst
docs/scripts.rst
docs/_static/.gitkeep
docs/files/file_actions_sample_1.yaml
docs/files/job_conf_sample_mq.xml
docs/files/job_conf_sample_mq_rsync.xml
docs/files/job_conf_sample_remote_cluster.xml
docs/files/job_conf_sample_windows.xml
docs/scripts/pulsar-check.rst
docs/scripts/pulsar-config.rst
docs/scripts/pulsar-main.rst
docs/scripts/pulsar.rst
docs/scripts/pulsar_check.rst
docs/scripts/pulsar_config.rst
docs/scripts/pulsar_config_windows.rst
docs/scripts/pulsar_main.rst
files/persisted_data/info.txt
install_test/common_functions.bash
install_test/galaxy_job_conf.xml
install_test/test_install.bash
install_test/test_install_conda.bash
pulsar/__init__.py
pulsar/core.py
pulsar/locks.py
pulsar/main.py
pulsar/manager_endpoint_util.py
pulsar/manager_factory.py
pulsar/cache/__init__.py
pulsar/cache/persistence.py
pulsar/cache/util.py
pulsar/client/__init__.py
pulsar/client/action_mapper.py
pulsar/client/amqp_exchange.py
pulsar/client/amqp_exchange_factory.py
pulsar/client/client.py
pulsar/client/config_util.py
pulsar/client/decorators.py
pulsar/client/destination.py
pulsar/client/exceptions.py
pulsar/client/job_directory.py
pulsar/client/manager.py
pulsar/client/object_client.py
pulsar/client/path_mapper.py
pulsar/client/server_interface.py
pulsar/client/setup_handler.py
pulsar/client/util.py
pulsar/client/staging/__init__.py
pulsar/client/staging/down.py
pulsar/client/staging/up.py
pulsar/client/test/__init__.py
pulsar/client/test/check.py
pulsar/client/test/test_common.py
pulsar/client/transport/__init__.py
pulsar/client/transport/curl.py
pulsar/client/transport/poster.py
pulsar/client/transport/requests.py
pulsar/client/transport/ssh.py
pulsar/client/transport/standard.py
pulsar/managers/__init__.py
pulsar/managers/queued.py
pulsar/managers/queued_cli.py
pulsar/managers/queued_condor.py
pulsar/managers/queued_drmaa.py
pulsar/managers/queued_drmaa_xsede.py
pulsar/managers/queued_external_drmaa.py
pulsar/managers/queued_pbs.py
pulsar/managers/stateful.py
pulsar/managers/status.py
pulsar/managers/unqueued.py
pulsar/managers/base/__init__.py
pulsar/managers/base/base_drmaa.py
pulsar/managers/base/directory.py
pulsar/managers/base/external.py
pulsar/managers/staging/__init__.py
pulsar/managers/staging/post.py
pulsar/managers/staging/pre.py
pulsar/managers/util/__init__.py
pulsar/managers/util/aws_batch.py
pulsar/managers/util/env.py
pulsar/managers/util/external.py
pulsar/managers/util/kill.py
pulsar/managers/util/process_groups.py
pulsar/managers/util/pykube_util.py
pulsar/managers/util/retry.py
pulsar/managers/util/sudo.py
pulsar/managers/util/tes.py
pulsar/managers/util/cli/__init__.py
pulsar/managers/util/cli/factory.py
pulsar/managers/util/cli/job/__init__.py
pulsar/managers/util/cli/job/lsf.py
pulsar/managers/util/cli/job/pbs.py
pulsar/managers/util/cli/job/slurm.py
pulsar/managers/util/cli/job/slurm_torque.py
pulsar/managers/util/cli/job/torque.py
pulsar/managers/util/cli/shell/__init__.py
pulsar/managers/util/cli/shell/local.py
pulsar/managers/util/cli/shell/rsh.py
pulsar/managers/util/condor/__init__.py
pulsar/managers/util/drmaa/__init__.py
pulsar/managers/util/job_script/CLUSTER_SLOTS_STATEMENT.sh
pulsar/managers/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh
pulsar/managers/util/job_script/MEMORY_STATEMENT.sh
pulsar/managers/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh
pulsar/managers/util/job_script/__init__.py
pulsar/mesos/__init__.py
pulsar/mesos/framework.py
pulsar/messaging/__init__.py
pulsar/messaging/bind_amqp.py
pulsar/scripts/__init__.py
pulsar/scripts/_conda_init.py
pulsar/scripts/_configure_galaxy_cvmfs.py
pulsar/scripts/_configure_slurm.py
pulsar/scripts/bootstrap.py
pulsar/scripts/chown_working_directory.py
pulsar/scripts/config.py
pulsar/scripts/drmaa_kill.py
pulsar/scripts/drmaa_launch.py
pulsar/scripts/finish.py
pulsar/scripts/mesos_executor.py
pulsar/scripts/mesos_framework.py
pulsar/scripts/run.py
pulsar/scripts/submit.py
pulsar/scripts/submit_util.py
pulsar/scripts/cvmfs_data/data.galaxyproject.org.pub
pulsar/scripts/cvmfs_data/default.local
pulsar/scripts/cvmfs_data/galaxyproject.org.conf
pulsar/tools/__init__.py
pulsar/tools/authorization.py
pulsar/tools/toolbox.py
pulsar/tools/validator.py
pulsar/user_auth/__init__.py
pulsar/user_auth/manager.py
pulsar/user_auth/methods/__init__.py
pulsar/user_auth/methods/allow_all.py
pulsar/user_auth/methods/interface.py
pulsar/user_auth/methods/oidc.py
pulsar/user_auth/methods/userlist.py
pulsar/util/__init__.py
pulsar/util/pastescript/__init__.py
pulsar/util/pastescript/loadwsgi.py
pulsar/util/pastescript/serve.py
pulsar/web/__init__.py
pulsar/web/framework.py
pulsar/web/routes.py
pulsar/web/wsgi.py
pulsar_galaxy_lib.egg-info/PKG-INFO
pulsar_galaxy_lib.egg-info/SOURCES.txt
pulsar_galaxy_lib.egg-info/dependency_links.txt
pulsar_galaxy_lib.egg-info/entry_points.txt
pulsar_galaxy_lib.egg-info/not-zip-safe
pulsar_galaxy_lib.egg-info/requires.txt
pulsar_galaxy_lib.egg-info/top_level.txt
scripts/chown_working_directory.bash
scripts/configure_test_slurm.py
scripts/drmaa_kill.bash
scripts/drmaa_launch.bash
scripts/execute_script.bash
scripts/gen_pem.sh
scripts/mesos_executor
scripts/mesos_framework
scripts/pulsar
scripts/pulsar.bat
scripts/submit.bash
test/__init__.py
test/action_mapper_test.py
test/amqp_test.py
test/authorization_test.py
test/cache_test.py
test/cli_help_tests.py
test/cli_test.py
test/client_manager_test.py
test/client_staging_test.py
test/client_test.py
test/client_transport_test.py
test/integration_test.py
test/integration_test_cli_submit.py
test/integration_test_state.py
test/job_directory_test.py
test/main_util_test.py
test/manager_coexecution_test.py
test/manager_drmaa_test.py
test/manager_factory_test.py
test/manager_queued_test.py
test/manager_test.py
test/path_mapper_test.py
test/persistence_test.py
test/pulsar_objectstore_test.py
test/retry_action_test.py
test/routes_test.py
test/script_run_test.py
test/scripts_config_test.py
test/tes_test.py
test/test_utils.py
test/toolbox_test.py
test/transfer_action_test.py
test/validator_test.py
test/wsgi_app_test.py
test_data/test_job_conf.yaml
test_data/test_shed_toolbox.xml
test_data/testkey
test_data/testkey.pub
test_data/test_shed/tool_repo/tool1.xml
test_data/test_shed/tool_repo/tool1_wrapper.py
tools/bootstrap_history.py
tools/commit_version.py
tools/install_venv.py
tools/install_virtualenv.sh
tools/new_version.py
tools/pre-commit-lint
tools/pre-commit-lint-and-test
tools/print_version_for_release.py
tools/replace_galaxy_requirements_for_ci.py
tools/with_venv.sh
wsgi_path.egg-info/PKG-INFO
wsgi_path.egg-info/README
wsgi_path.egg-info/top_level.txt