Metadata-Version: 2.1
Name: WSI_handling
Version: 0.14.1
Summary: Convienent handling of annotated whole slide images
Home-page: https://github.com/pjl54/WSI_handling/tree/pip_ready
Author: Patrick Leo
Author-email: pjl54@case.edu
License: MIT
Download-URL: https://github.com/pjl54/WSI_handling/archive/v0.13.tar.gz
Description: # WSI_handling
        Code for handling digital pathology pyramidal whole slide images (WSIs). Currently works with annotation XMLs from Aperio ImageScope or annotation json's from QuPath and image formats supported by Openslide.
        
        Supports getting a tile from a WSI at the desired micron-per-pixel (mpp), getting either the whole WSI or an annotated region, generating a mask image for either a tile or the WSIs, and showing the location of a tile on the WSI.
        
        # Annotation format
        XML annotations must follow the AperioImagescope format
        
        <?xml version="1.0" encoding="UTF-8"?>
        <Annotations>
        <Annotation LineColor="65280">
        <Regions>
        <Region>
        <Vertices>
        <Vertex X="56657.4765625" Y="78147.3984375"/>
        <Vertex X="56657.4765625" Y="78147.3984375"/>
        <Vertex X="56664.46875" Y="78147.3984375"/>
        </Region>
        </Regions>
        </Annotation>
        </Annotations>
        
        With more <Annotation> or <Region> blocks for additional annotations.
        
        json annotations must follow QuPath's json export format.
        
        # Installation
        
        pip install WSI_handling
        
        # Usage
        See https://github.com/pjl54/WSI_handling/blob/master/wsi_demo.ipynb
Keywords: whole slide image,digital pathology,annotations
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3.6
Description-Content-Type: text/markdown
