README.md
ragtag.py
ragtag_agp2fasta.py
ragtag_break_query.py
ragtag_correct.py
ragtag_delta2paf.py
ragtag_scaffold.py
ragtag_stats.py
ragtag_update_gff.py
setup.py
RagTag.egg-info/PKG-INFO
RagTag.egg-info/SOURCES.txt
RagTag.egg-info/dependency_links.txt
RagTag.egg-info/requires.txt
RagTag.egg-info/top_level.txt
RagTag.egg-info/zip-safe
ragtag_utilities/AGPFile.py
ragtag_utilities/Aligner.py
ragtag_utilities/AlignmentReader.py
ragtag_utilities/ContigAlignment.py
ragtag_utilities/__init__.py
ragtag_utilities/utilities.py