.dockerignore
.gitignore
Dockerfile
LICENSE
MANIFEST.in
README.md
docker-compose.yml
mkdocs.yml
pyproject.toml
requirements.txt
setup.cfg
setup.py
.github/workflows/build.yml
.github/workflows/docs.yml
.vscode/launch.json
.vscode/settings.json
.vscode/tasks.json
docs/changelog.md
docs/directories.md
docs/docker.md
docs/file-types.md
docs/index.md
docs/license.md
docs/mkdocstrings.css
docs/python.md
docs/requirements.txt
docs/cli/apps.md
docs/cli/classification.md
docs/cli/export.md
docs/cli/intro.md
docs/cli/measurement.md
docs/cli/preprocessing.md
docs/cli/segmentation.md
docs/cli/tools.md
docs/python/intro.md
docs/python/api/steinbock.classification.md
docs/python/api/steinbock.export.md
docs/python/api/steinbock.io.md
docs/python/api/steinbock.measurement.md
docs/python/api/steinbock.preprocessing.md
docs/python/api/steinbock.segmentation.md
docs/python/api/steinbock.tools.md
steinbock/__init__.py
steinbock/__main__.py
steinbock/_env.py
steinbock/io.py
steinbock/version.py
steinbock.egg-info/PKG-INFO
steinbock.egg-info/SOURCES.txt
steinbock.egg-info/dependency_links.txt
steinbock.egg-info/entry_points.txt
steinbock.egg-info/not-zip-safe
steinbock.egg-info/requires.txt
steinbock.egg-info/top_level.txt
steinbock/_cli/__init__.py
steinbock/_cli/apps.py
steinbock/_cli/utils.py
steinbock/classification/__init__.py
steinbock/classification/_cli/__init__.py
steinbock/classification/_cli/ilastik.py
steinbock/classification/ilastik/__init__.py
steinbock/classification/ilastik/ilastik.py
steinbock/classification/ilastik/data/pixel_classifier.ilp
steinbock/export/__init__.py
steinbock/export/_cli.py
steinbock/export/data.py
steinbock/export/graphs.py
steinbock/measurement/__init__.py
steinbock/measurement/intensities.py
steinbock/measurement/neighbors.py
steinbock/measurement/regionprops.py
steinbock/measurement/_cli/__init__.py
steinbock/measurement/_cli/cellprofiler.py
steinbock/measurement/_cli/intensities.py
steinbock/measurement/_cli/neighbors.py
steinbock/measurement/_cli/regionprops.py
steinbock/measurement/cellprofiler/__init__.py
steinbock/measurement/cellprofiler/cellprofiler.py
steinbock/measurement/cellprofiler/data/cell_measurement.cppipe
steinbock/preprocessing/__init__.py
steinbock/preprocessing/imc.py
steinbock/preprocessing/_cli/__init__.py
steinbock/preprocessing/_cli/imc.py
steinbock/segmentation/__init__.py
steinbock/segmentation/deepcell.py
steinbock/segmentation/_cli/__init__.py
steinbock/segmentation/_cli/cellprofiler.py
steinbock/segmentation/_cli/deepcell.py
steinbock/segmentation/cellprofiler/__init__.py
steinbock/segmentation/cellprofiler/cellprofiler.py
steinbock/segmentation/cellprofiler/data/cell_segmentation.cppipe
steinbock/tools/__init__.py
steinbock/tools/matching.py
steinbock/tools/mosaics.py
steinbock/tools/_cli/__init__.py
steinbock/tools/_cli/mosaics.py