LICENSE.txt
MANIFEST.in
README.md
setup.cfg
setup.py
CloudHummingbird.egg-info/PKG-INFO
CloudHummingbird.egg-info/SOURCES.txt
CloudHummingbird.egg-info/dependency_links.txt
CloudHummingbird.egg-info/entry_points.txt
CloudHummingbird.egg-info/requires.txt
CloudHummingbird.egg-info/top_level.txt
Hummingbird/__init__.py
Hummingbird/backend.conf
Hummingbird/downsample.py
Hummingbird/errors.py
Hummingbird/hummingbird.py
Hummingbird/hummingbird_utils.py
Hummingbird/instance.py
Hummingbird/profiler.py
Hummingbird/scheduler.py
Hummingbird/validator.py
Hummingbird/AWS/README.md
Hummingbird/AWS/compute_environment.json
Hummingbird/AWS/hummingbird-cloudformation.template
Hummingbird/AWS/job-definition.json
Hummingbird/AWS/launch-template-data.json
Hummingbird/Azure/README.md
Hummingbird/Azure/task.json
Hummingbird/conf/examples/atac.conf.json
Hummingbird/conf/examples/atac.task.conf.json
Hummingbird/conf/examples/atac.task.pct.conf.json
Hummingbird/conf/examples/atac.task.whole.conf.json
Hummingbird/conf/examples/bowtie.conf.json
Hummingbird/conf/examples/bqsr-ApplyBQSR.conf.json
Hummingbird/conf/examples/bqsr-BaseRecalibrator.conf.json
Hummingbird/conf/examples/bwa.aws.conf.json
Hummingbird/conf/examples/bwa.azure.conf.json
Hummingbird/conf/examples/bwa.conf.json
Hummingbird/conf/examples/fastqtoubam.json
Hummingbird/conf/examples/gatk.conf.json
Hummingbird/conf/examples/gatk_whole.conf.json
Hummingbird/conf/examples/haplotypecaller.cmd.conf.json
Hummingbird/conf/examples/haplotypecaller.conf.json
Hummingbird/conf/examples/mutect2.cmd.conf.json
Hummingbird/conf/examples/mutect2.conf.json
Hummingbird/conf/examples/mutect2.gatk4.conf.json
Hummingbird/conf/examples/picard-markdup.conf.json
Hummingbird/conf/examples/picard-sortsam.conf.json
Hummingbird/conf/examples/reheader.conf.json
Hummingbird/conf/examples/sample.conf.json
Hummingbird/conf/examples/trimming.json
Hummingbird/plot/__init__.py
Hummingbird/plot/plot.py
Hummingbird/test/__init__.py
Hummingbird/test/test_instance.py
Hummingbird/test/test_scheduler.py