LICENSE
MANIFEST.in
README.md
setup.py
test/__init__.py
test/benchmark_vcf_load.py
test/common.py
test/data.py
test/test_cli_effects.py
test/test_cli_genes.py
test/test_collection_filtering.py
test/test_common.py
test/test_cosmic_mutations.py
test/test_dbnsfp_validation.py
test/test_effect_annotation_errors.py
test/test_effect_classes.py
test/test_effect_collection.py
test/test_effect_collection_serialization.py
test/test_effects_from_mutagenix_variants.py
test/test_exonic_splice_site.py
test/test_frameshift_helpers.py
test/test_maf.py
test/test_mm10_klf6_frameshift.py
test/test_mouse.py
test/test_mutate.py
test/test_no_duplicate_variants.py
test/test_problematic_variants.py
test/test_reference.py
test/test_string_helpers.py
test/test_timings.py
test/test_variant.py
test/test_variant_collection.py
test/test_vcf.py
test/test_vcf_output.py
varcode/__init__.py
varcode/common.py
varcode/maf.py
varcode/nucleotides.py
varcode/reference.py
varcode/string_helpers.py
varcode/ucsc_reference_names.py
varcode/util.py
varcode/variant.py
varcode/variant_collection.py
varcode/vcf.py
varcode/vcf_output.py
varcode/version.py
varcode.egg-info/PKG-INFO
varcode.egg-info/SOURCES.txt
varcode.egg-info/dependency_links.txt
varcode.egg-info/entry_points.txt
varcode.egg-info/requires.txt
varcode.egg-info/top_level.txt
varcode/cli/__init__.py
varcode/cli/effects_script.py
varcode/cli/genes_script.py
varcode/cli/logging.conf
varcode/cli/variant_args.py
varcode/cli/version_info.py
varcode/effects/__init__.py
varcode/effects/common.py
varcode/effects/effect_classes.py
varcode/effects/effect_collection.py
varcode/effects/effect_helpers.py
varcode/effects/effect_ordering.py
varcode/effects/effect_prediction.py
varcode/effects/effect_prediction_coding.py
varcode/effects/effect_prediction_coding_frameshift.py
varcode/effects/effect_prediction_coding_in_frame.py
varcode/effects/mutate.py
varcode/effects/transcript_helpers.py
varcode/effects/translate.py