CHANGELOG
LICENSE
MANIFEST.in
README.rst
setup.cfg
setup.py
docs/README.md
docs/conf.py
docs/content_theory.txt
docs/index.rst
docs/requirements.txt
docs/sec_changelog.rst
docs/sec_code_reference.rst
docs/sec_examples.rst
docs/sec_introduction.rst
docs/sec_theory.rst
docs/sec_z_bib.rst
docs/extensions/fancy_include.py
docs/extensions/github_changelog.py
examples/compare_metrics.py
examples/example_helper.py
examples/generate_example_images.py
examples/refocus_cell.jpg
examples/refocus_cell.py
examples/data/HL60_field.zip
nrefocus/__init__.py
nrefocus/_version.py
nrefocus/_version_save.py
nrefocus/autof.py
nrefocus/legacy.py
nrefocus/pad.py
nrefocus/propg.py
nrefocus/roi_handling.py
nrefocus.egg-info/PKG-INFO
nrefocus.egg-info/SOURCES.txt
nrefocus.egg-info/dependency_links.txt
nrefocus.egg-info/requires.txt
nrefocus.egg-info/top_level.txt
nrefocus/iface/__init__.py
nrefocus/iface/base.py
nrefocus/iface/rf_numpy.py
nrefocus/iface/rf_numpy_1d.py
nrefocus/iface/rf_pyfftw.py
nrefocus/metrics/__init__.py
nrefocus/metrics/mt_avg_grad.py
nrefocus/metrics/mt_med_grad.py
nrefocus/metrics/mt_rms_contrast.py
nrefocus/metrics/mt_spectrum.py
nrefocus/metrics/mt_std_grad.py
nrefocus/minimizers/__init__.py
nrefocus/minimizers/mz_legacy.py
nrefocus/minimizers/mz_lmfit.py
tests/README.md
tests/test_1d_refocus.py
tests/test_2d_autofocus.py
tests/test_2d_autofocus_legacy.py
tests/test_2d_refocus.py
tests/test_helper.py
tests/test_pad.py
tests/test_refocus_numpy.py
tests/test_refocus_numpy_1d.py
tests/test_refocus_pyfftw.py
tests/test_roi_handling.py
tests/data/test_1d_refocus1.txt
tests/data/test_2d_refocus1.txt
tests/data/test_2d_refocus_stack.txt