# first line is the description of what the program does.
# subsequent lines list positional arguments (PA), then key-value (KV)arguments (KVA).
# Positional line:
# PA_name|PA_Description|Is_out_dir|Is_Dir|Check_Directory|Is_file|Check_File|||
# Key/Value Line:
# KVA_name|KVA_Description|Is_out_dir|Is_Dir|Check_Directory|Is_file|Check_File|alternate_KVA_name|default value|type
# -print_x_thresh|print every X threshold|0|0|0|0|0|--print_every_x_threshold|1|int
# For KVAs for booleans, set default value to BOOLEANFALSE or BOOLEANTRUE.
# If default is BOOLEANFALSE, then if you set the flag it will be True. (or vice-versa)
# -get_top_words|get top most probable words|0|0|0|0|0|--get_top_probable_words|BOOLEANFALSE|
#  out_dir must be given.
# 
# Example below. First line describes the program
Compute AUCROC and other stats from infile. Print AUCROC and PR curves.
out_dir|Top level directory that holds all the results|1|1|1|0|0|||
infile|file path of file with a file with header in format call(1 or 0)\tX\tValue|0|0|0|1|1|||
-print_x_thresh|print every X threshold|0|0|0|0|0|--print_every_x_threshold|1|int
