README.md
setup.py
asymmetree/__init__.py
asymmetree.egg-info/PKG-INFO
asymmetree.egg-info/SOURCES.txt
asymmetree.egg-info/dependency_links.txt
asymmetree.egg-info/requires.txt
asymmetree.egg-info/top_level.txt
asymmetree/best_matches/ExtBestHits.py
asymmetree/best_matches/LRTConstructor.py
asymmetree/best_matches/Quartets.py
asymmetree/best_matches/TreeReconstruction.py
asymmetree/best_matches/TrueBMG.py
asymmetree/best_matches/__init__.py
asymmetree/cograph/Cograph.py
asymmetree/cograph/CographEditor.py
asymmetree/cograph/LinearCographDetector.py
asymmetree/cograph/__init__.py
asymmetree/paraphylo/SpeciesTreeFromPO.py
asymmetree/paraphylo/SpeciesTreeFromParalogs.py
asymmetree/paraphylo/__init__.py
asymmetree/proteinortho/POBestMatches.py
asymmetree/proteinortho/PODistanceCalculator.py
asymmetree/proteinortho/POOutgroupFinder.py
asymmetree/proteinortho/POParser.py
asymmetree/proteinortho/__init__.py
asymmetree/simulator/DistanceMatrix.py
asymmetree/simulator/NoisyMatrix.py
asymmetree/simulator/Scenario.py
asymmetree/simulator/TreeImbalancer.py
asymmetree/simulator/TreeSimulator.py
asymmetree/simulator/__init__.py
asymmetree/tools/BuildST.py
asymmetree/tools/DoublyLinkedList.py
asymmetree/tools/FileIO.py
asymmetree/tools/GraphTools.py
asymmetree/tools/PhyloTree.py
asymmetree/tools/SequencesPyvolve.py
asymmetree/tools/Tree.py
asymmetree/tools/__init__.py
asymmetree/tools/hdtgraph/DynamicGraph.py
asymmetree/tools/hdtgraph/ETTree.py
asymmetree/tools/hdtgraph/__init__.py
asymmetree/visualize/GeneTreeVis.py
asymmetree/visualize/__init__.py
examples/__init__.py
examples/best_match_infer.py
examples/tree_simulation.py