Metadata-Version: 2.1
Name: pyroglancer
Version: 0.0.5
Summary: Pythonic interface to neuroglancer for displaying neuronal and synaptic data
Home-page: https://github.com/SridharJagannathan/pyroglancer
Author: Sridhar Jagannathan
Author-email: j.sridharrajan@gmail.com
License: BSD (3-clause)
Description: [![Build Status](https://github.com/SridharJagannathan/pyroglancer/workflows/Tests/badge.svg)](https://github.com/SridharJagannathan/pyroglancer/actions)
        [![codecov](https://codecov.io/gh/SridharJagannathan/pyroglancer/branch/master/graph/badge.svg?token=HuY5pVjAMm)](https://codecov.io/gh/SridharJagannathan/pyroglancer) [![PyPI version](https://badge.fury.io/py/pyroglancer.svg)](https://badge.fury.io/py/pyroglancer) [![Downloads](https://pepy.tech/badge/pyroglancer)](https://pepy.tech/project/pyroglancer)
        
        ![image](https://github.com/SridharJagannathan/pyroglancer/raw/master/docs/_static/pyroglancer_logo.png)
        
        Pythonic interface to neuroglancer for displaying neuronal data like
        neurons, synapses, meshes (surfaces, volumes), annotations (points) in
        the precomputed format.
        
        Installation
        ============
        
        The easiest way to install the package is via `pip`:
        
            $ pip3 install pyroglancer
        
        The easiest way to install the latest developments from `GitHub` is:
        
            $ pip3 install git+git://github.com/SridharJagannathan/pyroglancer@master
        
        Documentation
        =============
        
        <https://SridharJagannathan.github.io/pyroglancer>
        
        Features
        ========
        
        -   Fetch and display neurons/neuropil meshes from electron microscopy (EM) datasets like hemibrain, FAFB etc and light microscopy (LM) 
            neurons in mesh format.
        -   Display locally modified neurons or neuropil meshes.
        -   Display synapse annotations etc
        
        | Elements | Format |  Source |  Datasets |
        | --- | --- | --- | --- |
        | `neuron` | skeletons (swc) or volumetric meshes | `CATMAID`, `neuprint`, `vritualflybrain` or other locally modified data | EM datasets like FAFB, hemibrain or any other LM dataset like lineage clones etc |
        | `neuropils` | volumetric meshes | `CATMAID`, `neuprint` or other locally modified data | FAFB, hemibrain |
        | `synapses` | point annotations or precomputed format | neuroglancer layers or other locally modified data | FAFB, hemibrain |
        
        
        Acknowledgements
        ================
        
        Thanks to [Jeremy Maitin-Shepard](https://github.com/jbms) from google
        for inventing the precomputed format and answering many of my queries. The pyroglancer
        logo was inspired from [PyPy](https://www.pypy.org/). The pyroglancer critically depends on
        packages like [NAVis](https://github.com/schlegelp/navis) for interfacing with neuron data.
        
        Copyright & License
        ===================
        
        Copyright (c) 2021, [Sridhar Jagannathan](https://github.com/SridharJagannathan).
        3-clause BSD License.
        
Platform: UNKNOWN
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Natural Language :: English
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Requires-Python: >=3.6
Description-Content-Type: text/markdown
