Metadata-Version: 1.0
Name: scipion-em-modelangelo
Version: 3.0.3
Summary: Scipion plugin for modelangelo.
Home-page: https://github.com/scipion-em/scipion-em-modelangelo
Author: Pablo Conesa
Author-email: scipion@cnb.cnb.csic.es
License: UNKNOWN
Description: ====================
        Modelangelo   plugin
        ====================
        
        This plugin provide a wrapper for `Model angelo <https://github.com/3dem/model-angelo>`_ which allows *de novo* atomic modelling
        
        
        Installation
        ------------
        
        a) Stable version
        
        .. code-block::
        
            scipion3 installp -p scipion-em-modelangelo
        
        b) Developer's version
        
            * download repository
        
            .. code-block::
        
                git clone https://github.com/scipion-em/scipion-em-modelangelo.git
        
            * install
        
            .. code-block::
        
                scipion3 installp -p path_to_scipion-em-modelangelo --devel
        
        Modelangelo will be installed automatically with the plugin using a Conda environment.
        
        
        Configuration variables
        .......................
        
        There are some variables related to the model-angelo installation. If you have installed
        model-angelo within Scipion, you may define `MODEL_ANGELO_ENV_ACTIVATION` for specifying
        how to activate the environment. This variable with be used together with the general
        conda activation to generate the final model-angelo command. For example:
        
        .. code-block::
        
            MODEL_ANGELO_ENV_ACTIVATION = conda activate model_angelo
        
        If this variable is not defined, a default value will be provided that will work if the
        latest version is installed.
        
        If model-angelo is installed already outside Scipion, one could define `MODEL_ANGELO_ACTIVATION`.
        This variable will provide an activation (or load) command that can be anything and the Scipion
        conda activate will not be prepended. For example (loading model-angelo as a module):
        
        .. code-block::
        
            MODEL_ANGELO_ACTIVATION = module load model-angelo/main
        
        
        
        Protocols
        ---------
        
        * Model builder
        
        Tests
        -----
        
        * scipion3 tests modelangelo.tests.tests_model_angelo.TestModelAngel
        
        
Keywords: scipion cryoem imageprocessing modelling modelangelo scipion-3.0
Platform: UNKNOWN
