LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
docs/Makefile
docs/conf.py
docs/make.bat
docs/_static/favicon.png
docs/_templates/custom-class-template.rst
docs/_templates/custom-module-template.rst
docs/api/openomics.ClinicalData.rst
docs/api/openomics.CopyNumberVariation.rst
docs/api/openomics.DNAMethylation.rst
docs/api/openomics.Expression.rst
docs/api/openomics.LncRNA.rst
docs/api/openomics.MessengerRNA.rst
docs/api/openomics.MicroRNA.rst
docs/api/openomics.MultiOmics.rst
docs/api/openomics.Protein.rst
docs/api/openomics.SomaticMutation.rst
docs/api/openomics.database.annotation.BioMartManager.rst
docs/api/openomics.database.annotation.EnsemblGeneSequences.rst
docs/api/openomics.database.annotation.EnsemblGenes.rst
docs/api/openomics.database.annotation.EnsemblSNP.rst
docs/api/openomics.database.annotation.EnsemblSomaticVariation.rst
docs/api/openomics.database.annotation.EnsemblTranscriptSequences.rst
docs/api/openomics.database.annotation.GTEx.rst
docs/api/openomics.database.annotation.NONCODE.rst
docs/api/openomics.database.annotation.ProteinAtlas.rst
docs/api/openomics.database.annotation.RNAcentral.rst
docs/api/openomics.database.annotation.TANRIC.rst
docs/api/openomics.database.base.Annotatable.rst
docs/api/openomics.database.base.Database.rst
docs/api/openomics.database.disease.DisGeNet.rst
docs/api/openomics.database.disease.DiseaseAssociation.rst
docs/api/openomics.database.disease.HMDD.rst
docs/api/openomics.database.disease.LncRNADisease.rst
docs/api/openomics.database.disease.MalaCards.rst
docs/api/openomics.database.disease.OMIM.rst
docs/api/openomics.database.interaction.BioGRID.rst
docs/api/openomics.database.interaction.GeneMania.rst
docs/api/openomics.database.interaction.Interactions.rst
docs/api/openomics.database.interaction.LncBase.rst
docs/api/openomics.database.interaction.LncRNA2Target.rst
docs/api/openomics.database.interaction.LncReg.rst
docs/api/openomics.database.interaction.MiRTarBase.rst
docs/api/openomics.database.interaction.NPInter.rst
docs/api/openomics.database.interaction.STRING.rst
docs/api/openomics.database.interaction.StarBase.rst
docs/api/openomics.database.interaction.TargetScan.rst
docs/api/openomics.database.interaction.lncRInter.rst
docs/api/openomics.database.interaction.lncRNome.rst
docs/api/openomics.database.ontology.GeneOntology.rst
docs/api/openomics.database.ontology.HumanPhenotypeOntology.rst
docs/api/openomics.database.ontology.Ontology.rst
docs/api/openomics.database.ontology.dfs_path.rst
docs/api/openomics.database.ontology.filter_dfs_paths.rst
docs/api/openomics.database.ontology.flatten.rst
docs/api/openomics.database.ontology.flatten_list.rst
docs/api/openomics.database.ontology.traverse_predecessors.rst
docs/api/openomics.database.ontology.write_taxonomy.rst
docs/api/openomics.database.sequence.GENCODE.rst
docs/api/openomics.database.sequence.MirBase.rst
docs/api/openomics.database.sequence.SequenceDatabase.rst
docs/api/openomics.multiomics.MultiOmics.rst
docs/api/openomics.set_backend.rst
docs/api/openomics.set_cache_dir.rst
docs/api/openomics.utils.get_pkg_data_filename.rst
docs/api/openomics.utils.read_gtf.rst
openomics/__init__.py
openomics/clinical.py
openomics/genomics.py
openomics/imageomics.py
openomics/multicohorts.py
openomics/multiomics.py
openomics/proteomics.py
openomics/transcriptomics.py
openomics.egg-info/PKG-INFO
openomics.egg-info/SOURCES.txt
openomics.egg-info/dependency_links.txt
openomics.egg-info/not-zip-safe
openomics.egg-info/requires.txt
openomics.egg-info/top_level.txt
openomics/database/__init__.py
openomics/database/annotation.py
openomics/database/base.py
openomics/database/disease.py
openomics/database/interaction.py
openomics/database/ontology.py
openomics/database/sequence.py
openomics/utils/__init__.py
openomics/utils/df.py
openomics/utils/io.py
openomics/utils/read_gtf.py
openomics/visualization/__init__.py
openomics/visualization/heatmat.py
openomics/visualization/umap.py
tests/__init__.py
tests/test_annotations.py
tests/test_clinical.py
tests/test_disease.py
tests/test_interaction.py
tests/test_multiomics.py
tests/test_sequences.py
tests/data/__init__.py
tests/data/TCGA_LUAD/LUAD__geneExp.txt
tests/data/TCGA_LUAD/LUAD__miRNAExp__RPM.txt
tests/data/TCGA_LUAD/LUAD__protein_RPPA.txt
tests/data/TCGA_LUAD/LUAD__somaticMutation_geneLevel.txt
tests/data/TCGA_LUAD/TCGA-rnaexpr.tsv
tests/data/TCGA_LUAD/genome.wustl.edu_biospecimen_sample_luad.txt
tests/data/TCGA_LUAD/nationwidechildrens.org_clinical_drug_luad.txt
tests/data/TCGA_LUAD/nationwidechildrens.org_clinical_patient_luad.txt
tests/data/TCGA_LUAD/protein_RPPA.txt
tests/~/.openomics/conf.json