Metadata-Version: 2.1
Name: ilus
Version: 1.0.2
Summary: ilus: A handy tools for generating WGS/WES analysis pipeline.
Home-page: https://github.com/ShujiaHuang/ilus
Author: Shujia Huang
Author-email: huangshujia9@gmail.com
Maintainer: Shujia Huang
Maintainer-email: huangshujia9@gmail.com
License: BSD (3-clause)
Download-URL: https://github.com/ShujiaHuang/ilus
Platform: UNKNOWN
Classifier: Intended Audience :: Science/Research
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: License :: OSI Approved :: BSD License
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Operating System :: POSIX
Classifier: Operating System :: POSIX :: Linux
Classifier: Operating System :: MacOS
License-File: LICENSE.txt

Ilus
====

**Ilus** is a handy pipeline generater for whole genome re-sequencing (WGS) and whole exom sequencing data (WES) analysis.

English | `简体中文 <./README.rst>`__


Installation
------------
**ilus** is written by Python and release in PyPI. You can install it just by running the following command:

.. code:: bash

    pip install ilus

You can type **ilus** in your commandline terminal if everything is smooth.

Quick Start
-----------

There are several functions in **ilus**:

.. code:: bash

    $ ilus --help

You will see all the functions:

.. code:: bash

    usage: ilus [-h] {WGS,genotype-joint-calling,VQSR} ...

    ilus: A WGS analysis pipeline.

    optional arguments:
        -h, --help            show this help message and exit

    ilus commands:
    {WGS,genotype-joint-calling,VQSR}
        WGS                 Creating pipeline for WGS(from fastq to genotype VCF)
        genotype-joint-calling Genotype from GVCFs.
        VQSR                VQSR


Here is all the Chinese `简体中文帮助文档 <./README_CN.rst>`_ for how to creat WGS/WES pipeline by ilus. 

English version is coming.  





