Metadata-Version: 2.1
Name: dipwmsearch
Version: 0.1.2
Summary: Provides functions to search for any di-nucleotidic Position Weight Matrix (di-PWM) in a genomic sequence
Home-page: https://gite.lirmm.fr/rivals/dipwmsearch
Author: Marie Mille (main contributor), Bastien Cazaux, Julie Ripoll and Eric Rivals
Author-email: dipwm@lirmm.fr
License: UNKNOWN
Project-URL: Bug Tracker, https://gite.lirmm.fr/rivals/dipwmsearch/-/issues
Project-URL: Documentation, https://rivals.lirmm.net/dipwmsearch/
Project-URL: Team, http://www.lirmm.fr/equipes/mab
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: CeCILL-B Free Software License Agreement (CECILL-B)
Classifier: License :: OSI Approved :: CEA CNRS Inria Logiciel Libre License, version 2.1 (CeCILL-2.1)
Classifier: Operating System :: OS Independent
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Software Development :: Libraries :: Python Modules
Requires-Python: >=3.6
Description-Content-Type: text/markdown

# Package `dipwmsearch`

## Description
This package provides efficient functions to search for one kind of probabilistic motifs known as *di-nucleotidic Position Weight Matrices* (di-PWMs) in a genomic sequence. 


## Documentation
A full [documentation](https://rivals.lirmm.net/dipwmsearch/) details how to install and use the package, and also provides ready-to-use scripts for searching a motif in FASTA sequence. 

**Please refer to**:   [https://rivals.lirmm.net/dipwmsearch/](https://rivals.lirmm.net/dipwmsearch/) 


**Contact**: [dipwm@lirmm.fr](mailto:dipwm@lirmm.fr)

## License
License type: [CeCILL-B](https://cecill.info/licences/Licence_CeCILL-B_V1-en.html)

## Authors
- Marie Mille (main contributor)
- Bastien Cazaux
- Julie Ripoll
- [Eric Rivals](https://www.lirmm.fr/~rivals/)

## Dependencies
### Basics to install
- `pyahocorasick`
   [documentation](https://pyahocorasick.readthedocs.io/en/latest/index.html)
   
### For tests
- `pytest`
- `pandas`


