Metadata-Version: 1.1
Name: jobrunner
Version: 1.3.0
Summary: An abstraction layer to run jobs on HPC clusters using Grid Engine, Torque, or locally.
Home-page: https://github.com/CFSAN-Biostatistics/jobrunner
Author: Steve Davis
Author-email: steven.davis@fda.hhs.gov
License: BSD
Description: ===============================
        jobrunner
        ===============================
        
        
        .. Image showing the PyPI version badge - links to PyPI
        .. image:: https://img.shields.io/pypi/v/jobrunner.svg
                :target: https://pypi.python.org/pypi/jobrunner
        
        .. Image showing the Travis Continuous Integration test status, commented out for now
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        ..        :target: https://travis-ci.org/CFSAN-Biostatistics/jobrunner
        
        
        
        An abstraction layer to run jobs on HPC clusters using Grid Engine, SLURM, Torque, or locally.
        
        The jobrunner package was developed by the United States Food
        and Drug Administration, Center for Food Safety and Applied Nutrition.
        
        * Free software
        * Documentation: https://jobrunner.readthedocs.io
        * Source Code: https://github.com/CFSAN-Biostatistics/jobrunner
        * PyPI Distribution: https://pypi.python.org/pypi/jobrunner
        
        
        Features
        --------
        
        * Python API for job submission
        * Consistent interface to run jobs on Grid Engine, SLURM, Torque, or locally
        * Dependencies between jobs
        * Array jobs and normal non-array jobs
        * Array job parameter substitution
        * Array job slot-dependency
        * Limit the CPU resources consumed by array jobs
        * Separate log files for each array job task
        
        
        Citing jobrunner
        --------------------------------------
        
        To cite jobrunner, please reference the jobrunner GitHub repository:
        
            https://github.com/CFSAN-Biostatistics/jobrunner
        
        
        License
        -------
        
        See the LICENSE file included in the jobrunner distribution.
        
        
        
        
        
        History
        =======
        
        1.3.0 (2020-04-12)
        ---------------------
        * Add support for the SLURM job scheduler.
        * Add capability to request exclusive access to compute nodes when running on SLURM.
        
        1.2.0 (2019-10-11)
        ---------------------
        * Add the capability to run in quiet mode when running locally on a workstation
          so the job stdout and stderr are written to log files only.
        
        1.1.0 (2019-06-07)
        ---------------------
        * HPC array job command lines are quoted and executed in a subshell by default with better support for complex command lines.
        
        1.0.0 (2018-12-03)
        ---------------------
        
        * First public release.
        
Keywords: bioinformatics,NGS,jobrunner
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: BSD License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
