MANIFEST.in
README.md
setup.cfg
setup.py
argtest/ARGs_OAP.py
argtest/README.md
argtest/__init__.py
argtest/argoap_pipeline_stageone_version2
argtest/argoap_pipeline_stageone_version2.3
argtest/argoap_pipeline_stagetwo_version2
argtest/index.rst
argtest/stage_one.py
argtest/stage_two.py
argtest.egg-info/PKG-INFO
argtest.egg-info/SOURCES.txt
argtest.egg-info/dependency_links.txt
argtest.egg-info/entry_points.txt
argtest.egg-info/top_level.txt
argtest/DB/KO30_DIAMOND.dmnd
argtest/DB/SARG.2.2.diamondv0.9.24.dmnd
argtest/DB/SARG.2.2.fasta
argtest/DB/SARG.2.2.fasta.phr
argtest/DB/SARG.2.2.fasta.pin
argtest/DB/SARG.2.2.fasta.psq
argtest/DB/all_KO30_name.list
argtest/DB/gg85.fasta
argtest/DB/gg85_yinxiaole.fasta.mmi
argtest/DB/structure_20181107.LIST
argtest/DB/update_45_sarg2.0_16s.table_201704.txt
argtest/DB/update_45_sarg2.0_cell.table_201704.txt
argtest/bin/Fq2fa.pl
argtest/bin/blastx
argtest/bin/copy_correction.pl
argtest/bin/de-replicate.pl
argtest/bin/diamond
argtest/bin/diamondv0.9.24
argtest/bin/divide_extract.fa_meta_data_online.pl
argtest/bin/extract_usearch_reads.pl
argtest/bin/fastp
argtest/bin/merge_extracted_fa_update_metadate.v2.3.pl
argtest/bin/minimap2
argtest/bin/obtain_community.pl
argtest/bin/samtools
argtest/bin/bbmap/README.md
argtest/bin/bbmap/a_sample_mt.sh
argtest/bin/bbmap/addadapters.sh
argtest/bin/bbmap/addssu.sh
argtest/bin/bbmap/adjusthomopolymers.sh
argtest/bin/bbmap/alltoall.sh
argtest/bin/bbmap/analyzeaccession.sh
argtest/bin/bbmap/analyzegenes.sh
argtest/bin/bbmap/analyzesketchresults.sh
argtest/bin/bbmap/applyvariants.sh
argtest/bin/bbmap/bbcms.sh
argtest/bin/bbmap/bbcountunique.sh
argtest/bin/bbmap/bbduk.sh
argtest/bin/bbmap/bbest.sh
argtest/bin/bbmap/bbfakereads.sh
argtest/bin/bbmap/bbmap.sh
argtest/bin/bbmap/bbmapskimmer.sh
argtest/bin/bbmap/bbmask.sh
argtest/bin/bbmap/bbmerge-auto.sh
argtest/bin/bbmap/bbmerge.sh
argtest/bin/bbmap/bbnorm.sh
argtest/bin/bbmap/bbrealign.sh
argtest/bin/bbmap/bbrename.sh
argtest/bin/bbmap/bbsketch.sh
argtest/bin/bbmap/bbsplit.sh
argtest/bin/bbmap/bbsplitpairs.sh
argtest/bin/bbmap/bbstats.sh
argtest/bin/bbmap/bbversion.sh
argtest/bin/bbmap/bbwrap.sh
argtest/bin/bbmap/bloomfilter.sh
argtest/bin/bbmap/calcmem.sh
argtest/bin/bbmap/calctruequality.sh
argtest/bin/bbmap/callgenes.sh
argtest/bin/bbmap/callpeaks.sh
argtest/bin/bbmap/callvariants.sh
argtest/bin/bbmap/callvariants2.sh
argtest/bin/bbmap/clumpify.sh
argtest/bin/bbmap/commonkmers.sh
argtest/bin/bbmap/comparegff.sh
argtest/bin/bbmap/comparesketch.sh
argtest/bin/bbmap/comparessu.sh
argtest/bin/bbmap/comparevcf.sh
argtest/bin/bbmap/consect.sh
argtest/bin/bbmap/consensus.sh
argtest/bin/bbmap/countbarcodes.sh
argtest/bin/bbmap/countgc.sh
argtest/bin/bbmap/countsharedlines.sh
argtest/bin/bbmap/crossblock.sh
argtest/bin/bbmap/crosscontaminate.sh
argtest/bin/bbmap/cutgff.sh
argtest/bin/bbmap/cutprimers.sh
argtest/bin/bbmap/decontaminate.sh
argtest/bin/bbmap/dedupe.sh
argtest/bin/bbmap/dedupe2.sh
argtest/bin/bbmap/dedupebymapping.sh
argtest/bin/bbmap/demuxbyname.sh
argtest/bin/bbmap/diskbench.sh
argtest/bin/bbmap/estherfilter.sh
argtest/bin/bbmap/explodetree.sh
argtest/bin/bbmap/fetchproks.sh
argtest/bin/bbmap/filterassemblysummary.sh
argtest/bin/bbmap/filterbarcodes.sh
argtest/bin/bbmap/filterbycoverage.sh
argtest/bin/bbmap/filterbyname.sh
argtest/bin/bbmap/filterbysequence.sh
argtest/bin/bbmap/filterbytaxa.sh
argtest/bin/bbmap/filterbytile.sh
argtest/bin/bbmap/filterlines.sh
argtest/bin/bbmap/filterqc.sh
argtest/bin/bbmap/filtersam.sh
argtest/bin/bbmap/filtersilva.sh
argtest/bin/bbmap/filtersubs.sh
argtest/bin/bbmap/filtervcf.sh
argtest/bin/bbmap/fixgaps.sh
argtest/bin/bbmap/fungalrelease.sh
argtest/bin/bbmap/fuse.sh
argtest/bin/bbmap/gbff2gff.sh
argtest/bin/bbmap/getreads.sh
argtest/bin/bbmap/gi2ancestors.sh
argtest/bin/bbmap/gi2taxid.sh
argtest/bin/bbmap/gitable.sh
argtest/bin/bbmap/grademerge.sh
argtest/bin/bbmap/gradesam.sh
argtest/bin/bbmap/icecreamfinder.sh
argtest/bin/bbmap/icecreamgrader.sh
argtest/bin/bbmap/icecreammaker.sh
argtest/bin/bbmap/idmatrix.sh
argtest/bin/bbmap/idtree.sh
argtest/bin/bbmap/invertkey.sh
argtest/bin/bbmap/kapastats.sh
argtest/bin/bbmap/kcompress.sh
argtest/bin/bbmap/keepbestcopy.sh
argtest/bin/bbmap/khist.sh
argtest/bin/bbmap/kmercountexact.sh
argtest/bin/bbmap/kmercountmulti.sh
argtest/bin/bbmap/kmercoverage.sh
argtest/bin/bbmap/kmerfilterset.sh
argtest/bin/bbmap/kmerlimit.sh
argtest/bin/bbmap/kmerlimit2.sh
argtest/bin/bbmap/license.txt
argtest/bin/bbmap/lilypad.sh
argtest/bin/bbmap/loadreads.sh
argtest/bin/bbmap/loglog.sh
argtest/bin/bbmap/makechimeras.sh
argtest/bin/bbmap/makecontaminatedgenomes.sh
argtest/bin/bbmap/makepolymers.sh
argtest/bin/bbmap/mapPacBio.sh
argtest/bin/bbmap/matrixtocolumns.sh
argtest/bin/bbmap/mergeOTUs.sh
argtest/bin/bbmap/mergebarcodes.sh
argtest/bin/bbmap/mergepgm.sh
argtest/bin/bbmap/mergeribo.sh
argtest/bin/bbmap/mergesam.sh
argtest/bin/bbmap/mergesketch.sh
argtest/bin/bbmap/mergesorted.sh
argtest/bin/bbmap/msa.sh
argtest/bin/bbmap/mutate.sh
argtest/bin/bbmap/muxbyname.sh
argtest/bin/bbmap/partition.sh
argtest/bin/bbmap/phylip2fasta.sh
argtest/bin/bbmap/pileup.sh
argtest/bin/bbmap/plotflowcell.sh
argtest/bin/bbmap/plotgc.sh
argtest/bin/bbmap/postfilter.sh
argtest/bin/bbmap/printtime.sh
argtest/bin/bbmap/processfrag.sh
argtest/bin/bbmap/processhi-c.sh
argtest/bin/bbmap/processspeed.sh
argtest/bin/bbmap/randomgenome.sh
argtest/bin/bbmap/randomreads.sh
argtest/bin/bbmap/readlength.sh
argtest/bin/bbmap/readqc.sh
argtest/bin/bbmap/reducesilva.sh
argtest/bin/bbmap/reformat.sh
argtest/bin/bbmap/removebadbarcodes.sh
argtest/bin/bbmap/removecatdogmousehuman.sh
argtest/bin/bbmap/removehuman.sh
argtest/bin/bbmap/removehuman2.sh
argtest/bin/bbmap/removemicrobes.sh
argtest/bin/bbmap/removesmartbell.sh
argtest/bin/bbmap/rename.sh
argtest/bin/bbmap/renameimg.sh
argtest/bin/bbmap/repair.sh
argtest/bin/bbmap/replaceheaders.sh
argtest/bin/bbmap/representative.sh
argtest/bin/bbmap/rqcfilter.sh
argtest/bin/bbmap/rqcfilter2.sh
argtest/bin/bbmap/samtoroc.sh
argtest/bin/bbmap/seal.sh
argtest/bin/bbmap/sendsketch.sh
argtest/bin/bbmap/shred.sh
argtest/bin/bbmap/shrinkaccession.sh
argtest/bin/bbmap/shuffle.sh
argtest/bin/bbmap/shuffle2.sh
argtest/bin/bbmap/sketch.sh
argtest/bin/bbmap/sketchblacklist.sh
argtest/bin/bbmap/sketchblacklist2.sh
argtest/bin/bbmap/sortbyname.sh
argtest/bin/bbmap/splitbytaxa.sh
argtest/bin/bbmap/splitnextera.sh
argtest/bin/bbmap/splitribo.sh
argtest/bin/bbmap/splitsam.sh
argtest/bin/bbmap/splitsam4way.sh
argtest/bin/bbmap/splitsam6way.sh
argtest/bin/bbmap/stats.sh
argtest/bin/bbmap/statswrapper.sh
argtest/bin/bbmap/streamsam.sh
argtest/bin/bbmap/subsketch.sh
argtest/bin/bbmap/summarizecontam.sh
argtest/bin/bbmap/summarizecoverage.sh
argtest/bin/bbmap/summarizecrossblock.sh
argtest/bin/bbmap/summarizemerge.sh
argtest/bin/bbmap/summarizequast.sh
argtest/bin/bbmap/summarizescafstats.sh
argtest/bin/bbmap/summarizeseal.sh
argtest/bin/bbmap/summarizesketch.sh
argtest/bin/bbmap/synthmda.sh
argtest/bin/bbmap/tadpipe.sh
argtest/bin/bbmap/tadpole.sh
argtest/bin/bbmap/tadwrapper.sh
argtest/bin/bbmap/taxonomy.sh
argtest/bin/bbmap/taxserver.sh
argtest/bin/bbmap/taxsize.sh
argtest/bin/bbmap/taxtree.sh
argtest/bin/bbmap/testfilesystem.sh
argtest/bin/bbmap/testformat.sh
argtest/bin/bbmap/testformat2.sh
argtest/bin/bbmap/tetramerfreq.sh
argtest/bin/bbmap/textfile.sh
argtest/bin/bbmap/translate6frames.sh
argtest/bin/bbmap/unicode2ascii.sh
argtest/bin/bbmap/unzip.sh
argtest/bin/bbmap/vcf2gff.sh
argtest/bin/bbmap/webcheck.sh