11/24/21
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Michael Y Galperin, Yuri I Wolf, Kira S Makarova, Roberto Vera Alvarez, David Landsman, Eugene V Koonin (2021).
COG database update: focus on microbial diversity, model organisms, and widespread pathogens. NAR.
https://academic.oup.com/nar/article/49/D1/D274/5964069


10/17/21
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extract cellular localization info as children of GO:0110165 cellular anatomical entity:
  GO:0042597 periplasmic space
  GO:0005737 cytoplasm
  GO:0071944 cell periphery
  GO:0016020 membrane
  GO:0005615 extracellular space
  and many more...

I did this us /pacific/home/ioerger/U19/



3/29/21
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made list of 53 iron-related genes for Sami Nelson (Sassetti lab)

I think I did this:

> python list_GO_terms.py > iron_related_GO_terms.txt

12/20/20
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got smeg_GO_terms.txt from PATRIC
4832/6716 genes have at least 1 GO term
