biopandas
biopython
bioservices
matplotlib
multipledispatch
networkx
numpy
pandas
plotly
pydantic
pyyaml>=5.1
scikit-learn
scipy
tqdm
typing_extensions
wget
xarray

[all]
sphinx_rtd_theme
nbstripout
hypothesis
pytest
nbsphinx
pytest-xdist
nbval
sphinx
isort
pydocstyle
flake8
black
pycodestyle
interrogate
pytest-cov
pre-commit
pandoc
nbsphinx-link
furo

[dev]
black
flake8
furo
hypothesis
interrogate
isort
nbsphinx
nbsphinx-link
sphinx_rtd_theme
nbstripout
nbval
pandoc
pre-commit
pycodestyle
pydocstyle
pytest
pytest-cov
pytest-xdist
sphinx

[extras]
black
flake8
furo
hypothesis
interrogate
isort
nbsphinx
nbsphinx-link
sphinx_rtd_theme
nbstripout
nbval
pandoc
pre-commit
pycodestyle
pydocstyle
pytest
pytest-cov
pytest-xdist
sphinx
