Metadata-Version: 2.1
Name: pytmt
Version: 0.2.4
Summary: pytmt returns ms2 tmt quantification values from Crux Percolator output
Home-page: https://github.com/Molecular-Proteomics/pytmt
Author: Edward Lau
Author-email: edward.lau@cuanschutz.edu
License: UNKNOWN
Project-URL: Source, https://github.com/Molecular-Proteomics/pytmt
Project-URL: Maggie Lam Lab, http://www.maggielab.irg
Description: PyTMT returns ms2 tandem mass tag quantification values from Crux/Percolator output.
        
        ## Getting Started
        
        
        #### Requirements
        
        Install Python 3.6+ and pip. See instructions on Python website for specific instructions for your operating system.
        
        Install pytmt from PyPI. We recommend using a virtual environment.
        		
        	$ pip install pytmt
        
        
        #### Running
        	
        Launch pytmt as a Python module (Usage/Help)
        	
        	$ python -m pytmt
        
        Console entry point:
        
            $ pytmt
            
        Example command: 
        	
        	$ python -m pytmt /path/to/mzml/ /path/to/percolator/ -o /path/to/output/
        	
        
        ### Prerequisites
        
        pytmt is tested in Python 3.6, 3.7, and 3.8 and requires the following packages:
        
        ```
        pandas>=1.0.4
        pymzml==2.4.6
        tqdm>=4.46.0
        ```
        
        ## Contributing
        Please contact us if you wish to contribute, and submit pull requests to us.
        
        
        ## Authors
        * **Edward Lau, PhD** - *Code/design* - [ed-lau](https://github.com/ed-lau)
        * **Maggie Lam, PhD** - *Code/design* - [Maggie-Lam](https://github.com/Maggie-Lam)
        
        
        ## License
        This project is licensed under the MIT License - see the LICENSE file for details
        
Keywords: scientific proteomics mass-spectrometry
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Developers
Classifier: Topic :: Software Development :: Build Tools
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3 :: Only
Requires-Python: >=3.6, <4
Description-Content-Type: text/markdown
