LICENSE
README.md
setup.py
mdpy/__init__.py
mdpy/ensemble.py
mdpy/environment.py
mdpy/error.py
mdpy/simulation.py
mdpy/analyser/__init__.py
mdpy/analyser/analyser_result.py
mdpy/analyser/coordination_number_analyser.py
mdpy/analyser/diffusion_analyser.py
mdpy/analyser/hydrogen_bond_analyser.py
mdpy/analyser/mobility_analyser.py
mdpy/analyser/rdf_analyser.py
mdpy/analyser/residence_time_analyser.py
mdpy/constraint/__init__.py
mdpy/constraint/charmm_angle_constraint.py
mdpy/constraint/charmm_bond_constraint.py
mdpy/constraint/charmm_dihedral_constraint.py
mdpy/constraint/charmm_improper_constraint.py
mdpy/constraint/charmm_nonbonded_constraint.py
mdpy/constraint/constraint.py
mdpy/constraint/electrostatic_constraint.py
mdpy/core/__init__.py
mdpy/core/cell_list.py
mdpy/core/particle.py
mdpy/core/state.py
mdpy/core/topology.py
mdpy/core/trajectory.py
mdpy/dumper/__init__.py
mdpy/dumper/dumper.py
mdpy/dumper/log_dumper.py
mdpy/dumper/pdb_dumper.py
mdpy/file/__init__.py
mdpy/file/charmm_param_file.py
mdpy/file/pdb_file.py
mdpy/file/psf_file.py
mdpy/forcefield/__init__.py
mdpy/forcefield/amber_forcefield.py
mdpy/forcefield/charmm_forcefield.py
mdpy/forcefield/forcefield.py
mdpy/integrator/__init__.py
mdpy/integrator/integrator.py
mdpy/integrator/langevin_integrator.py
mdpy/integrator/verlet_integrator.py
mdpy/minimizer/__init__.py
mdpy/minimizer/conjugate_gradient_minimizer.py
mdpy/minimizer/minimizer.py
mdpy/minimizer/steepest_descent_minimizer.py
mdpy/test/__init__.py
mdpy/test/conftest.py
mdpy/test/run_test.py
mdpy/test/test_analyser_result.py
mdpy/test/test_base_dimension.py
mdpy/test/test_cell_list.py
mdpy/test/test_charmm_angle_constraint.py
mdpy/test/test_charmm_bond_constraint.py
mdpy/test/test_charmm_dihedral_constraint.py
mdpy/test/test_charmm_forcefield.py
mdpy/test/test_charmm_improper_constraint.py
mdpy/test/test_charmm_nonbonded_constraint.py
mdpy/test/test_charmm_param_file.py
mdpy/test/test_check_quantity.py
mdpy/test/test_conjugate_gradient_minimizer.py
mdpy/test/test_constraint.py
mdpy/test/test_dumper.py
mdpy/test/test_electrostatic_constraint.py
mdpy/test/test_ensemble.py
mdpy/test/test_environment.py
mdpy/test/test_forcefield.py
mdpy/test/test_geometry.py
mdpy/test/test_integrator.py
mdpy/test/test_langevin_integrator.py
mdpy/test/test_log_dumper.py
mdpy/test/test_minimizer.py
mdpy/test/test_particle.py
mdpy/test/test_pbc.py
mdpy/test/test_pdb_dumper.py
mdpy/test/test_pdb_file.py
mdpy/test/test_psf_file.py
mdpy/test/test_quantity.py
mdpy/test/test_select.py
mdpy/test/test_simulation.py
mdpy/test/test_state.py
mdpy/test/test_steepest_descent_minimizer.py
mdpy/test/test_topology.py
mdpy/test/test_trajectory.py
mdpy/test/test_unit.py
mdpy/test/test_unit_definition.py
mdpy/test/test_verlet_integrator.py
mdpy/test/data/1M9Z.pdb
mdpy/test/data/1M9Z.psf
mdpy/test/data/2BQJ.pdb
mdpy/test/data/2BQJ.psf
mdpy/test/data/6PO6.pdb
mdpy/test/data/6PO6.psf
mdpy/test/data/analyser_result.npz
mdpy/test/data/par_all36_prot.prm
mdpy/test/data/top_all36_na.rtf
mdpy/test/data/top_all36_prot.rtf
mdpy/test/data/toppar_water_ions_namd.str
mdpy/unit/__init__.py
mdpy/unit/base_dimension.py
mdpy/unit/quantity.py
mdpy/unit/unit.py
mdpy/unit/unit_definition.py
mdpy/utils/__init__.py
mdpy/utils/check_quantity.py
mdpy/utils/geometry.py
mdpy/utils/math.py
mdpy/utils/pbc.py
mdpy/utils/select.py
mdpy1.egg-info/PKG-INFO
mdpy1.egg-info/SOURCES.txt
mdpy1.egg-info/dependency_links.txt
mdpy1.egg-info/requires.txt
mdpy1.egg-info/top_level.txt