Applications
------------

BAGO evaluate the compound separations from the following applications:

* **Compound separation efficiency** - Omics-scale evaluation on compound separation. Read more from :doc:`/computeSepEff`

* **MS1 acquisition** - Evaluation on unique m/z values. Read more from :doc:`/getUniqueMz`

* **MS2 acquisition** - Evaluate the number of unique MS2. Read more from :doc:`/numberUniqueMS2`

* **Base peak chromatography** - Visualization of compound separation. Read more from :doc:`/plotBPC`

Other metabolomics data processing tools can also be used for customized evaluation:

`XCMS <https://www.bioconductor.org/packages/release/bioc/html/xcms.html>`_ |
`MS-DIAL <http://prime.psc.riken.jp/compms/msdial/main.html>`_ |
`MZmine 3 <http://mzmine.github.io/>`_ |
`El-MAVEN <https://www.elucidata.io/el-maven>`_ |