MS data (object)ΒΆ

This is an object for storing, manipulating and visualizing LC-MS data.

The object contains the following attributes:

  • rawData: A MSExperiment object (supported by pyopenms).

  • ms1Data: A ms1Spectrum object (supported by bago).

  • ms2Data: A ms2Spectrum object (supported by bago).

  • sNum: Number of top signals.

  • topSignals: Top signals.

  • intensityBPC: Intensities of the base peak chromatogram.

  • rtBPC: Retention times of the base peak chromatogram.

  • sepEff: Separation efficiency.

Parameters are needed to process the MS data. A templete of the parameters can be accessed by

from bago import bagoMain

print(bagoMain.parametersTemplate)