README.md
setup.py
simpa/__init__.py
simpa.egg-info/PKG-INFO
simpa.egg-info/SOURCES.txt
simpa.egg-info/dependency_links.txt
simpa.egg-info/requires.txt
simpa.egg-info/top_level.txt
simpa/core/__init__.py
simpa/core/simulation.py
simpa/core/acoustic_simulation/__init__.py
simpa/core/acoustic_simulation/acoustic_modelling.py
simpa/core/acoustic_simulation/k_wave_adapter.py
simpa/core/acoustic_simulation/test_acoustic_adapter.py
simpa/core/device_digital_twins/__init__.py
simpa/core/device_digital_twins/invision_device.py
simpa/core/device_digital_twins/msot_devices.py
simpa/core/device_digital_twins/pai_devices.py
simpa/core/device_digital_twins/rsom_device.py
simpa/core/image_reconstruction/MitkBeamformingAdapter.py
simpa/core/image_reconstruction/PyTorchDASAdapter.py
simpa/core/image_reconstruction/TestReconstructionAdapter.py
simpa/core/image_reconstruction/TimeReversalAdapter.py
simpa/core/image_reconstruction/__init__.py
simpa/core/image_reconstruction/reconstruction_modelling.py
simpa/core/noise_simulation/__init__.py
simpa/core/noise_simulation/noise_modelling.py
simpa/core/optical_simulation/__init__.py
simpa/core/optical_simulation/illumination_definition.py
simpa/core/optical_simulation/mcx_adapter.py
simpa/core/optical_simulation/mcxyz_adapter.py
simpa/core/optical_simulation/optical_modelling.py
simpa/core/optical_simulation/test_optical_adapter.py
simpa/core/volume_creation/__init__.py
simpa/core/volume_creation/segmentation_based_volume_creator.py
simpa/core/volume_creation/versatile_volume_creator.py
simpa/core/volume_creation/volume_creation.py
simpa/io_handling/__init__.py
simpa/io_handling/io_hdf5.py
simpa/io_handling/serialization.py
simpa/process/__init__.py
simpa/process/preprocess_images.py
simpa/process/sampling.py
simpa/utils/__init__.py
simpa/utils/calculate.py
simpa/utils/constants.py
simpa/utils/deformation_manager.py
simpa/utils/dict_path_manager.py
simpa/utils/settings_generator.py
simpa/utils/tags.py
simpa/utils/tissue_properties.py
simpa/utils/libraries/__init__.py
simpa/utils/libraries/literature_values.py
simpa/utils/libraries/molecule_library.py
simpa/utils/libraries/spectra_library.py
simpa/utils/libraries/structure_library.py
simpa/utils/libraries/tissue_library.py
simpa_examples/__init__.py
simpa_examples/access_saved_PAI_data.py
simpa_examples/create_custom_tissues.py
simpa_examples/minimal_optical_simulation.py
simpa_examples/optical_and_acoustic_simulation.py
simpa_examples/perform_image_reconstruction.py
simpa_examples/segmentation_loader.py
simpa_tests/__init__.py
simpa_tests/do_coverage.py
simpa_tests/framework_tests/TestCalculationUtils.py
simpa_tests/framework_tests/TestCreateAVolume.py
simpa_tests/framework_tests/TestCreateSettings.py
simpa_tests/framework_tests/TestIOHandling.py
simpa_tests/framework_tests/TestMoleculeLibrary.py
simpa_tests/framework_tests/TestPipeline.py
simpa_tests/framework_tests/__init__.py
simpa_tests/framework_tests/structure_tests/TestBoxes.py
simpa_tests/framework_tests/structure_tests/TestEllipticalTubes.py
simpa_tests/framework_tests/structure_tests/TestLayers.py
simpa_tests/framework_tests/structure_tests/TestParallelEpipeds.py
simpa_tests/framework_tests/structure_tests/TestSpheres.py
simpa_tests/framework_tests/structure_tests/TestTubes.py
simpa_tests/framework_tests/structure_tests/__init__.py
simpa_tests/simulation_tests/PyTorchDASReconstruction.py
simpa_tests/simulation_tests/TestDiffuseFluence.py
simpa_tests/simulation_tests/TestScatteringPropertyInSimulation.py
simpa_tests/simulation_tests/__init__.py
simpa_tests/test_utils/__init__.py