LICENSE
README.md
pyproject.toml
setup.py
/home/runner/work/pyalign/pyalign/pyalign/algorithm/pyalign.cpp
pyalign/__init__.py
pyalign/gaps.py
pyalign/solve.py
pyalign.egg-info/PKG-INFO
pyalign.egg-info/SOURCES.txt
pyalign.egg-info/dependency_links.txt
pyalign.egg-info/requires.txt
pyalign.egg-info/top_level.txt
pyalign/io/__init__.py
pyalign/io/plot.py
pyalign/problem/__init__.py
pyalign/problem/factory.py
pyalign/problem/function.py
pyalign/problem/instance.py
pyalign/tests/__init__.py
pyalign/tests/test_batch.py
pyalign/tests/test_form.py
pyalign/tests/test_gotoh.py
pyalign/tests/test_nw.py
pyalign/tests/test_sw.py
pyalign/tests/test_wsb.py