LICENSE
MANIFEST.in
README.rst
requirements.txt
setup.py
data/BSA1_omssa_2_1_9_unified.csv
example_scripts/access_result_class.py
example_scripts/basic_quantification_example.py
example_scripts/complete_BSA_quantification.py
example_scripts/determine_mz_and_i_error.py
example_scripts/generate_quant_summary_file.py
example_scripts/get_example_BSA_file.py
example_scripts/get_monoisotopic_mz.py
example_scripts/mic_2d_plot.py
example_scripts/mic_3d_plot.py
example_scripts/parse_ident_file_and_quantify.py
example_scripts/parse_ident_file_and_quantify_with_carbamidomethylation.py
example_scripts/plot_match_examples.py
example_scripts/quantify_mzml.py
example_scripts/view_isotopologue_overview.py
example_scripts/view_result_pkl_stats.py
example_scripts/visualize_scoring_information.py
example_scripts/write_BSA_mztab_results.py
example_scripts/write_mztab_result.py
example_scripts/write_raw_result_csv.py
pyqms/__init__.py
pyqms/adaptors.py
pyqms/chemical_composition.py
pyqms/isotopologue_library.py
pyqms/knowledge_base.py
pyqms/params.py
pyqms/results.py
pyqms/unimod_mapper.py
pyqms/version.txt
pyqms.egg-info/PKG-INFO
pyqms.egg-info/SOURCES.txt
pyqms.egg-info/dependency_links.txt
pyqms.egg-info/requires.txt
pyqms.egg-info/top_level.txt
pyqms/kb/ext/unimod.xml
tests/ChemicalComposition_tests.py
tests/Results_test.py
tests/UnimodMapper_test.py
tests/adaptor_calc_amount_test.py
tests/adaptor_parse_evidence_and_format_fixed_labels_test.py
tests/adaptor_parse_evidence_file_test.py
tests/adaptor_read_xlsx_test.py
tests/build_label_percentile_tuples_test.py
tests/carbamido_14N_15N_test.py
tests/create_combinations_test.py
tests/extend_kb_with_fixed_labels_test.py
tests/extend_molecules_with_fixed_labels_test.py
tests/group_silac_pairs.py
tests/increase_element_envelope_test.py
tests/knowledge_base_tests.py
tests/recalc_isotopic_distribution_test.py
tests/score_matches_tests.py
tests/slice_list_test.py
tests/smooth_list_test.py
tests/transform_mz_to_set_test.py
tests/transform_spectrum_test.py
tests/data/test_BSA_evidence.csv
tests/data/test_BSA_pyqms_results.pkl
tests/data/test_BSA_quant_summary.xlsx