.gitignore
MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Compiler/Code.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Compiler/FlowControl.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Compiler/ParseTreeTransforms.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Compiler/Parsing.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Compiler/Scanning.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Compiler/Visitor.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/openmp.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/__init__.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/array.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/bool.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/buffer.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/bytearray.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/bytes.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/cellobject.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/ceval.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/cobject.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/codecs.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/complex.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/contextvars.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/conversion.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/datetime.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/descr.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/dict.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/exc.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/fileobject.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/float.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/function.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/genobject.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/getargs.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/instance.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/int.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/iterator.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/iterobject.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/list.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/long.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/longintrepr.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/mapping.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/marshal.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/mem.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/memoryview.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/method.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/module.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/number.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/object.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/oldbuffer.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/pycapsule.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/pylifecycle.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/pyport.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/pystate.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/pythread.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/ref.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/sequence.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/set.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/slice.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/string.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/time.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/tuple.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/type.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/unicode.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/version.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/cpython/weakref.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libc/__init__.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libc/complex.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libc/errno.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libc/float.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libc/limits.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libc/locale.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libc/math.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libc/setjmp.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libc/signal.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libc/stddef.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libc/stdint.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libc/stdio.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libc/stdlib.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libc/string.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libc/time.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/__init__.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/algorithm.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/any.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/atomic.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/bit.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/cast.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/cmath.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/complex.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/deque.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/execution.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/forward_list.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/functional.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/iterator.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/limits.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/list.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/map.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/memory.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/numbers.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/numeric.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/optional.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/pair.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/queue.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/random.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/set.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/stack.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/string.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/typeindex.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/typeinfo.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/unordered_map.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/unordered_set.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/utility.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/libcpp/vector.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/numpy/__init__.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/numpy/math.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/posix/__init__.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/posix/dlfcn.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/posix/fcntl.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/posix/ioctl.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/posix/mman.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/posix/resource.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/posix/select.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/posix/signal.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/posix/stat.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/posix/stdio.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/posix/stdlib.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/posix/strings.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/posix/time.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/posix/types.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/posix/uio.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/posix/unistd.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Includes/posix/wait.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Plex/Actions.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Plex/DFA.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Plex/Machines.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Plex/Scanners.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Plex/Transitions.pxd
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Runtime/refnanny.pyx
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Utility/CConvert.pyx
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Utility/CpdefEnums.pyx
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Utility/CppConvert.pyx
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Utility/MemoryView.pyx
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Utility/TestCyUtilityLoader.pyx
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Utility/TestCythonScope.pyx
.eggs/Cython-3.0.0-py3.8-linux-x86_64.egg/Cython/Utility/UFuncs.pyx
bean/__init__.py
bean/annotate/__init__.py
bean/annotate/_supporting_fn.py
bean/annotate/filter_alleles.py
bean/annotate/ldlr_exons.fa
bean/annotate/translate_allele.py
bean/framework/AminoAcidEdit.py
bean/framework/Edit.py
bean/framework/ReporterScreen.py
bean/framework/__init__.py
bean/framework/allele_counts.py
bean/framework/__pycache__/ReporterScreen_.py
bean/mapping/CRISPResso2Align.c
bean/mapping/CRISPResso2Align.cpython-38-x86_64-linux-gnu.so
bean/mapping/CRISPResso2Align.cpython-39-x86_64-linux-gnu.so
bean/mapping/CRISPResso2Align.pyx
bean/mapping/GuideEditCounter.py
bean/mapping/__init__.py
bean/mapping/_supporting_fn.py
bean/mapping/utils.py
bean/model/__init__.py
bean/model/model.py
bean/model/readwrite.py
bean/model/utils.py
bean/model/post_training/__init__.py
bean/model/post_training/compare.py
bean/model/post_training/post_training.py
bean/model/post_training/utils.py
bean/plotting/__init__.py
bean/plotting/allele_stats.py
bean/plotting/editing_patterns.py
bean/preprocessing/__init__.py
bean/preprocessing/data_class.py
bean/preprocessing/get_alpha0.py
bean/preprocessing/get_pi_alpha0.py
bean/preprocessing/utils.py
bean/qc/__init__.py
bean/qc/guide_qc.py
bean/qc/sample_qc.py
bean/qc/utils.py
bean/utils/__init__.py
bean/utils/arithmetric.py
bean/utils/plot.py
beret_test/lib/python3.8/site-packages/numpy/__init__.cython-30.pxd
beret_test/lib/python3.8/site-packages/numpy/__init__.pxd
beret_test/lib/python3.8/site-packages/numpy/core/tests/examples/cython/checks.pyx
beret_test/lib/python3.8/site-packages/numpy/random/__init__.pxd
beret_test/lib/python3.8/site-packages/numpy/random/_bounded_integers.pxd
beret_test/lib/python3.8/site-packages/numpy/random/_common.pxd
beret_test/lib/python3.8/site-packages/numpy/random/bit_generator.pxd
beret_test/lib/python3.8/site-packages/numpy/random/c_distributions.pxd
beret_test/lib/python3.8/site-packages/numpy/random/_examples/cython/extending.pyx
beret_test/lib/python3.8/site-packages/numpy/random/_examples/cython/extending_distributions.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/algos.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/algos.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/arrays.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/arrays.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/dtypes.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/groupby.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/hashing.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/hashtable.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/hashtable.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/index.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/indexing.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/internals.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/interval.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/join.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/khash.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/lib.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/lib.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/missing.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/missing.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/ops.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/ops_dispatch.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/parsers.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/properties.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/reduction.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/reshape.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/sparse.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/testing.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslib.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/util.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/writers.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/base.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/base.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/ccalendar.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/ccalendar.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/conversion.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/conversion.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/dtypes.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/dtypes.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/fields.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/nattype.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/nattype.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/np_datetime.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/np_datetime.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/offsets.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/offsets.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/parsing.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/parsing.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/period.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/period.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/strptime.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/timedeltas.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/timedeltas.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/timestamps.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/timestamps.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/timezones.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/timezones.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/tzconversion.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/tzconversion.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/util.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/vectorized.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/window/aggregations.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/window/indexers.pyx
beret_test/lib/python3.8/site-packages/pandas/io/sas/sas.pyx
beret_test/lib/python3.8/site-packages/scipy/linalg.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize.pxd
beret_test/lib/python3.8/site-packages/scipy/special.pxd
beret_test/lib/python3.8/site-packages/scipy/linalg/cython_blas.pxd
beret_test/lib/python3.8/site-packages/scipy/linalg/cython_lapack.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/cython_optimize.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HConst.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/Highs.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsIO.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsInfo.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsLp.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsLpUtils.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsModelUtils.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsOptions.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsRuntimeOptions.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsStatus.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/SimplexConst.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/highs_c_api.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/cython_optimize/_zeros.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/cython_optimize/c_zeros.pxd
beret_test/lib/python3.8/site-packages/scipy/special/cython_special.pxd
beret_test/lib/python3.8/site-packages/scipy/stats/_biasedurn.pxd
beret_test/lib/python3.8/site-packages/scipy/stats/_unuran/unuran.pxd
bin/bean-count
bin/bean-count-samples
bin/bean-filter
bin/bean-qc
bin/bean-run
crispr_bean.egg-info/PKG-INFO
crispr_bean.egg-info/SOURCES.txt
crispr_bean.egg-info/dependency_links.txt
crispr_bean.egg-info/requires.txt
crispr_bean.egg-info/top_level.txt
docs/ReporterScreen_api.ipynb
docs/ReporterScreen_api.rst
docs/editing_pattern_analysis.ipynb
docs/sample_quality_report.ipynb
imgs/anbe.svg
imgs/bean_title.svg
imgs/output_20_2.png
imgs/output_34_1.png
imgs/reporter_construct.svg
imgs/reporter_screen.svg
imgs/screendata.svg
tests/test_Edit.py
tests/test_count.py
tests/CRISPRessoCount_on_test/CRISPRessoCount_RUNNING_LOG.txt
tests/data/sample_list.csv
tests/data/test_R1.fastq
tests/data/test_R2.fastq
tests/data/test_guide_info.csv