LICENSE
README.md
pyproject.toml
setup.cfg
setup.py
src/pyliger/__init__.py
src/pyliger/_settings.py
src/pyliger/_utilities.py
src/pyliger/logging.py
src/pyliger/pyliger.py
src/pyliger/read_write.py
src/pyliger.egg-info/PKG-INFO
src/pyliger.egg-info/SOURCES.txt
src/pyliger.egg-info/dependency_links.txt
src/pyliger.egg-info/not-zip-safe
src/pyliger.egg-info/requires.txt
src/pyliger.egg-info/top_level.txt
src/pyliger/clustering/__init__.py
src/pyliger/clustering/_leiden.py
src/pyliger/clustering/_louvain.py
src/pyliger/clustering/_utilities.py
src/pyliger/datasets/__init__.py
src/pyliger/datasets/_load_datasets.py
src/pyliger/factorization/__init__.py
src/pyliger/factorization/_iNMF_ANLS.py
src/pyliger/factorization/_iNMF_HALS.py
src/pyliger/factorization/_online_iNMF.py
src/pyliger/factorization/_utilities.py
src/pyliger/plotting/__init__.py
src/pyliger/plotting/_dataset_cluster.py
src/pyliger/plotting/_gene.py
src/pyliger/plotting/_gene_loadings.py
src/pyliger/plotting/_go.py
src/pyliger/plotting/_heatmap.py
src/pyliger/plotting/_qc.py
src/pyliger/plotting/_spatial.py
src/pyliger/plotting/_utilities.py
src/pyliger/preprocessing/__init__.py
src/pyliger/preprocessing/_cal_feature.py
src/pyliger/preprocessing/_initialization.py
src/pyliger/preprocessing/_normalization.py
src/pyliger/preprocessing/_qc.py
src/pyliger/preprocessing/_scale.py
src/pyliger/preprocessing/_select_genes.py
src/pyliger/tools/__init__.py
src/pyliger/tools/_go.py
src/pyliger/tools/_marker.py
src/pyliger/tools/_metrics.py
src/pyliger/tools/_quantile_norm.py
src/pyliger/tools/_umap.py
src/pyliger/tools/_wilcoxon.py