CHANGELOG.md
CONTRIBUTING.md
COPYING
MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
include/dir.h
include/projrel.h
include/libmeme/__init__.pxd
include/libmeme/alphabet.pxd
include/libmeme/array.pxd
include/libmeme/array_list.pxd
include/libmeme/calculate_p_y.pxd
include/libmeme/cisml.pxd
include/libmeme/data_types.pxd
include/libmeme/display.pxd
include/libmeme/em.pxd
include/libmeme/hash_table.pxd
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include/libmeme/json_writer.pxd
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include/libmeme/logs.pxd
include/libmeme/macros.pxd
include/libmeme/matrix.pxd
include/libmeme/meme.pxd
include/libmeme/message.pxd
include/libmeme/mhmm.pxd
include/libmeme/motif.pxd
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include/libmeme/prior.pxd
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include/libmeme/pssm.pxd
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include/libmeme/red_black_tree.pxd
include/libmeme/reservoir.pxd
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include/libmeme/sp_matrix.pxd
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include/libmeme/string_list.pxd
include/libmeme/user.pxd
include/libmeme/ushuffle.pxd
include/libmeme/utils.pxd
pymemesuite/__init__.py
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pymemesuite/cisml.pxd
pymemesuite/cisml.pyx
pymemesuite/common.pxd
pymemesuite/common.pyx
pymemesuite/errors.pyx
pymemesuite/fimo.pyx
pymemesuite.egg-info/PKG-INFO
pymemesuite.egg-info/SOURCES.txt
pymemesuite.egg-info/dependency_links.txt
pymemesuite.egg-info/not-zip-safe
pymemesuite.egg-info/top_level.txt
vendor/meme/ARCHIVE_DATE
vendor/meme/ARCHIVE_REVISION
vendor/meme/AUTHORS
vendor/meme/COPYING
vendor/meme/ChangeLog
vendor/meme/INSTALL
vendor/meme/Makefile.am
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vendor/meme/MemeSuite.properties.in
vendor/meme/NEWS
vendor/meme/README
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vendor/meme/config/missing
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vendor/meme/src/reduce-alignment.c
vendor/meme/src/regex-utils.c
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vendor/meme/src/regress.c
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vendor/meme/src/remove-alignment-gaps.c
vendor/meme/src/reservoir.c
vendor/meme/src/reservoir.h
vendor/meme/src/sax-parser-utils.c
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vendor/meme/src/scanned-sequence.c
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vendor/meme/src/scored-sites.c
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vendor/meme/src/sea.c
vendor/meme/src/seed.c
vendor/meme/src/seed.h
vendor/meme/src/seed_diffs.c
vendor/meme/src/seed_diffs.h
vendor/meme/src/seq-reader-from-fasta.c
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vendor/meme/src/seq.c
vendor/meme/src/seq.h
vendor/meme/src/seq2theta.c
vendor/meme/src/shadow.c
vendor/meme/src/shuffle_int.h
vendor/meme/src/simple-getopt.c
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vendor/meme/src/sp_matrix.c
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vendor/meme/src/spamo-cisml.h
vendor/meme/src/spamo-matches.c
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vendor/meme/src/spamo-output.c
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vendor/meme/src/spamo-scan.c
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vendor/meme/src/spamo.c
vendor/meme/src/spearman-rank-correlation.c
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vendor/meme/src/split.h
vendor/meme/src/st_access.c
vendor/meme/src/st_arraydef.h
vendor/meme/src/st_construct.c
vendor/meme/src/st_construct_gen.h
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vendor/meme/src/st_errordef.h
vendor/meme/src/st_intbits.h
vendor/meme/src/st_mapfile.c
vendor/meme/src/st_megabytes.h
vendor/meme/src/st_multidef.h
vendor/meme/src/st_seterror.c
vendor/meme/src/st_space.c
vendor/meme/src/st_spacedef.h
vendor/meme/src/st_streeacc.h
vendor/meme/src/st_streehuge.h
vendor/meme/src/st_streemac.h
vendor/meme/src/st_streetyp.h
vendor/meme/src/st_symboldef.h
vendor/meme/src/st_types.h
vendor/meme/src/star.h
vendor/meme/src/starts.c
vendor/meme/src/streme-sax.c
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vendor/meme/src/streme-utils.c
vendor/meme/src/streme-utils.h
vendor/meme/src/streme.c
vendor/meme/src/string-builder.c
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vendor/meme/src/string-list.c
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vendor/meme/src/string-match.c
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vendor/meme/src/strlcpy.h
vendor/meme/src/subseq7.c
vendor/meme/src/subst-matrix.c
vendor/meme/src/subst-matrix.h
vendor/meme/src/substmatrix-table.c
vendor/meme/src/substmatrix-table.h
vendor/meme/src/tcm.c
vendor/meme/src/tgene.c
vendor/meme/src/tomtom.c
vendor/meme/src/transfac.c
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vendor/meme/src/tree.c
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vendor/meme/src/user.h
vendor/meme/src/ushuffle.c
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vendor/meme/src/utest.h
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vendor/meme/src/verbosity.c
vendor/meme/src/wiggle-reader.c
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vendor/meme/src/write-mhmm.c
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vendor/meme/src/xlate-in.c
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vendor/meme/src/zscore.h
vendor/meme/src/filters/Makefile.am
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vendor/meme/src/filters/dust/Makefile.am
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vendor/meme/src/filters/dust/getfa.c
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vendor/meme/src/filters/purge/afnio.c
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vendor/meme/src/libxml2/Copyright
vendor/meme/src/libxml2/DOCBparser.c
vendor/meme/src/libxml2/HTMLparser.c
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vendor/meme/src/libxml2/Makefile.am
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vendor/meme/src/libxml2/c14n.c
vendor/meme/src/libxml2/catalog.c
vendor/meme/src/libxml2/chvalid.c
vendor/meme/src/libxml2/debugXML.c
vendor/meme/src/libxml2/dict.c
vendor/meme/src/libxml2/elfgcchack.h
vendor/meme/src/libxml2/encoding.c
vendor/meme/src/libxml2/entities.c
vendor/meme/src/libxml2/error.c
vendor/meme/src/libxml2/globals.c
vendor/meme/src/libxml2/hash.c
vendor/meme/src/libxml2/legacy.c
vendor/meme/src/libxml2/libxml.h
vendor/meme/src/libxml2/list.c
vendor/meme/src/libxml2/ltmain.sh
vendor/meme/src/libxml2/nanoftp.c
vendor/meme/src/libxml2/nanohttp.c
vendor/meme/src/libxml2/parser.c
vendor/meme/src/libxml2/parserInternals.c
vendor/meme/src/libxml2/pattern.c
vendor/meme/src/libxml2/relaxng.c
vendor/meme/src/libxml2/schematron.c
vendor/meme/src/libxml2/threads.c
vendor/meme/src/libxml2/tree.c
vendor/meme/src/libxml2/trio.c
vendor/meme/src/libxml2/trio.h
vendor/meme/src/libxml2/triodef.h
vendor/meme/src/libxml2/trionan.c
vendor/meme/src/libxml2/trionan.h
vendor/meme/src/libxml2/triop.h
vendor/meme/src/libxml2/triostr.c
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vendor/meme/src/libxml2/uri.c
vendor/meme/src/libxml2/valid.c
vendor/meme/src/libxml2/xinclude.c
vendor/meme/src/libxml2/xlink.c
vendor/meme/src/libxml2/xmlIO.c
vendor/meme/src/libxml2/xmlmemory.c
vendor/meme/src/libxml2/xmlmodule.c
vendor/meme/src/libxml2/xmlreader.c
vendor/meme/src/libxml2/xmlregexp.c
vendor/meme/src/libxml2/xmlsave.c
vendor/meme/src/libxml2/xmlschemas.c
vendor/meme/src/libxml2/xmlschemastypes.c
vendor/meme/src/libxml2/xmlstring.c
vendor/meme/src/libxml2/xmlunicode.c
vendor/meme/src/libxml2/xmlwriter.c
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vendor/meme/src/libxml2/xpointer.c
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vendor/meme/src/libxml2/include/libxml/SAX.h
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vendor/meme/src/libxml2/include/libxml/c14n.h
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vendor/meme/src/libxml2/include/libxml/nanohttp.h
vendor/meme/src/libxml2/include/libxml/parser.h
vendor/meme/src/libxml2/include/libxml/parserInternals.h
vendor/meme/src/libxml2/include/libxml/pattern.h
vendor/meme/src/libxml2/include/libxml/relaxng.h
vendor/meme/src/libxml2/include/libxml/schemasInternals.h
vendor/meme/src/libxml2/include/libxml/schematron.h
vendor/meme/src/libxml2/include/libxml/threads.h
vendor/meme/src/libxml2/include/libxml/tree.h
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vendor/meme/src/libxml2/include/libxml/xmlwriter.h
vendor/meme/src/libxml2/include/libxml/xpath.h
vendor/meme/src/libxml2/include/libxml/xpathInternals.h
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vendor/meme/src/libxslt/Copyright
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