MANIFEST.in
README.md
setup.py
simAIRR/__init__.py
simAIRR.egg-info/PKG-INFO
simAIRR.egg-info/SOURCES.txt
simAIRR.egg-info/dependency_links.txt
simAIRR.egg-info/entry_points.txt
simAIRR.egg-info/not-zip-safe
simAIRR.egg-info/top_level.txt
simAIRR/concatenate_repertoire_components/RepComponentConcatenation.py
simAIRR/concatenate_repertoire_components/__init__.py
simAIRR/config_validator/ConfigValidator.py
simAIRR/config_validator/__init__.py
simAIRR/config_validator/public_seq_pgen_count_map.tsv
simAIRR/config_validator/signal_seq_pgen_count_map.tsv
simAIRR/expand_repertoire_components/ImplantationHelper.py
simAIRR/expand_repertoire_components/PublicRepertoireGeneration.py
simAIRR/expand_repertoire_components/SignalComponentGeneration.py
simAIRR/expand_repertoire_components/__init__.py
simAIRR/olga_baseline_gen/OlgaRepertoiresGeneration.py
simAIRR/olga_baseline_gen/__init__.py
simAIRR/olga_compute_pgen/OlgaPgenComputation.py
simAIRR/olga_compute_pgen/UniqueSequenceFilter.py
simAIRR/olga_compute_pgen/__init__.py
simAIRR/pgen_count_map/PgenCountMap.py
simAIRR/pgen_count_map/__init__.py
simAIRR/sequence_presence_matrix/SequencePresenceMatrix.py
simAIRR/sequence_presence_matrix/__init__.py
simAIRR/simairr_cli/__init__.py
simAIRR/simairr_cli/simairr_cli.py
simAIRR/util/__init__.py
simAIRR/util/utilities.py
simAIRR/workflows/Workflows.py
simAIRR/workflows/__init__.py
tests/concatenate_repertoire_components/__init__.py
tests/concatenate_repertoire_components/test_RepComponentConcatenation.py
tests/config_validator/__init__.py
tests/config_validator/test_ConfigValidator.py
tests/expand_repertoire_components/__init__.py
tests/expand_repertoire_components/test_ImplantationHelper.py
tests/expand_repertoire_components/test_PublicRepertoireGeneration.py
tests/expand_repertoire_components/test_SignalComponentGeneration.py
tests/olga_baseline_gen/__init__.py
tests/olga_baseline_gen/test_OlgaRepertoiresGeneration.py
tests/olga_compute_pgen/__init__.py
tests/olga_compute_pgen/test_OlgaPgenComputation.py
tests/olga_compute_pgen/test_UniqueSequenceFilter.py
tests/pgen_count_mapping/__init__.py
tests/pgen_count_mapping/test_PgenCountMap.py
tests/sequence_presence_matrix/__init__.py
tests/sequence_presence_matrix/test_SequencePresenceMatrix.py
tests/util/__init__.py
tests/util/test_utilities.py
tests/workflows/__init__.py
tests/workflows/test_Workflows.py