LICENSE
README.md
setup.py
ingenannot/__init__.py
ingenannot/main.py
ingenannot/version.py
ingenannot.egg-info/PKG-INFO
ingenannot.egg-info/SOURCES.txt
ingenannot.egg-info/dependency_links.txt
ingenannot.egg-info/entry_points.txt
ingenannot.egg-info/requires.txt
ingenannot.egg-info/top_level.txt
ingenannot/commands/__init__.py
ingenannot/commands/add_sqanti3_isoforms.py
ingenannot/commands/aed.py
ingenannot/commands/aed_compare.py
ingenannot/commands/clusterize.py
ingenannot/commands/command.py
ingenannot/commands/compare.py
ingenannot/commands/curation.py
ingenannot/commands/effector_predictor_cmd.py
ingenannot/commands/exonerate_to_gff.py
ingenannot/commands/filter.py
ingenannot/commands/isoform_ranking.py
ingenannot/commands/rename.py
ingenannot/commands/rescue_effectors.py
ingenannot/commands/select.py
ingenannot/commands/so_classification.py
ingenannot/commands/strand_annotation_filter.py
ingenannot/commands/utr_refine.py
ingenannot/commands/validate.py
ingenannot/entities/__init__.py
ingenannot/entities/cds.py
ingenannot/entities/cluster.py
ingenannot/entities/exon.py
ingenannot/entities/gene.py
ingenannot/entities/intron.py
ingenannot/entities/metagene.py
ingenannot/entities/transcript.py
ingenannot/utils/__init__.py
ingenannot/utils/annot_edit_distance.py
ingenannot/utils/effector_predictor.py
ingenannot/utils/em_operators.py
ingenannot/utils/gene_builder.py
ingenannot/utils/gff_reader.py
ingenannot/utils/graphics.py
ingenannot/utils/so_splicing_classifier.py
ingenannot/utils/statistics.py
ingenannot/utils/stats.py
ingenannot/utils/tool_checker.py