.gitignore
CHANGELOG.rst
LICENSE
MANIFEST.in
README.md
required_packages.txt
setup.py
TF_COMB.egg-info/PKG-INFO
TF_COMB.egg-info/SOURCES.txt
TF_COMB.egg-info/dependency_links.txt
TF_COMB.egg-info/not-zip-safe
TF_COMB.egg-info/requires.txt
TF_COMB.egg-info/top_level.txt
docs/CHANGELOG.rst
docs/Makefile
docs/README.md
docs/conf.py
docs/index.rst
docs/install.rst
docs/make.bat
docs/required_packages.txt
docs/API/index.rst
docs/API/tfcomb.analysis.rst
docs/API/tfcomb.annotation.rst
docs/API/tfcomb.network.rst
docs/API/tfcomb.objects.rst
docs/API/tfcomb.plotting.rst
docs/API/tfcomb.utils.rst
docs/_figures/anchor_modes_biorender.png
docs/_figures/mba_intro.png
docs/_figures/tfcomb_logo.png
docs/_figures/windows.png
docs/examples/index.rst
docs/methods/anchor.rst
docs/methods/index.rst
docs/methods/mba.rst
tfcomb/__init__.py
tfcomb/analysis.py
tfcomb/annotation.py
tfcomb/counting.c
tfcomb/counting.pyx
tfcomb/logging.py
tfcomb/network.py
tfcomb/objects.py
tfcomb/plotting.py
tfcomb/utils.py
tfcomb/data/HOCOMOCOv11_HUMAN.txt
tfcomb/data/JASPAR2020_CORE_vertebrates.txt
tfcomb/data/dmelanogaster_genes.txt
tfcomb/data/drerio_genes.txt
tfcomb/data/hsapiens_genes.txt
tfcomb/data/mmusculus_genes.txt
tfcomb/data/scerevisiae_genes.txt
tfcomb/data/tax_ids.txt
tfcomb/data/xtropicalis_genes.txt