Metadata-Version: 1.1
Name: neoepiscope
Version: 0.4.1
Summary: comprehensive neoepitope prediction software
Home-page: http://github.com/ohsu-comp-bio/neoepiscope
Author: Mary A. Wood, Austin Nguyen, Abhinav Nellore, Reid F. Thompson
Author-email: thompsre@ohsu.edu
License: MIT
Download-URL: https://github.com/pdxgx/neoepiscope/tarball/v0.4.1
Description: neoepiscope is software for predicting neoepitopes from DNA sequencing (DNA-seq) data. Where most neoepitope prediction software confines attention to neoepitopes arising from at most one somatic mutation, often just an SNV, neoepiscope uses assembled haplotype output of HapCUT2 (Edge et al., 2017) to also enumerate neoepitopes arising from more than one somatic mutation. neoepiscope also takes into account frameshifting from indels and permits personalizing the reference transcriptome using germline variants.
Keywords: neoepitope,neoantigen,cancer,immunotherapy
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Intended Audience :: Science/Research
Classifier: Intended Audience :: Education
Classifier: Operating System :: MacOS
Classifier: Operating System :: Unix
Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
