LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
OpenBioSeq.egg-info/PKG-INFO
OpenBioSeq.egg-info/SOURCES.txt
OpenBioSeq.egg-info/dependency_links.txt
OpenBioSeq.egg-info/not-zip-safe
OpenBioSeq.egg-info/requires.txt
OpenBioSeq.egg-info/top_level.txt
openbioseq/__init__.py
openbioseq/version.py
openbioseq/.mim/tools/dist_extract.sh
openbioseq/.mim/tools/dist_test.sh
openbioseq/.mim/tools/dist_train.sh
openbioseq/.mim/tools/extract.py
openbioseq/.mim/tools/kill.sh
openbioseq/.mim/tools/single_train.sh
openbioseq/.mim/tools/srun_extract.sh
openbioseq/.mim/tools/srun_test.sh
openbioseq/.mim/tools/srun_train.sh
openbioseq/.mim/tools/test.py
openbioseq/.mim/tools/train.py
openbioseq/.mim/tools/analysis_tools/analyze_logs.py
openbioseq/.mim/tools/analysis_tools/analyze_seq_feat.py
openbioseq/.mim/tools/analysis_tools/count_parameters.py
openbioseq/.mim/tools/analysis_tools/get_flops.py
openbioseq/.mim/tools/analysis_tools/gradcam.py
openbioseq/.mim/tools/analysis_tools/print_config.py
openbioseq/.mim/tools/model_converters/extract_backbone_weights.py
openbioseq/.mim/tools/model_converters/extract_dir_weights.py
openbioseq/.mim/tools/model_converters/publish_model.py
openbioseq/.mim/tools/model_converters/timm2openmixup.py
openbioseq/.mim/tools/model_converters/upgrade_models.py
openbioseq/.mim/tools/prepare_data/convert_imagenet_subsets.py
openbioseq/.mim/tools/prepare_data/convert_inaturalist.py
openbioseq/.mim/tools/prepare_data/convert_subset.py
openbioseq/.mim/tools/prepare_data/create_voc_data_files.py
openbioseq/.mim/tools/prepare_data/create_voc_low_shot_challenge_samples.py
openbioseq/.mim/tools/prepare_data/prepare_voc07_cls.sh
openbioseq/.mim/tools/summary/find_automix_val_median.py
openbioseq/.mim/tools/summary/find_classification_val_3times_average.py
openbioseq/.mim/tools/summary/find_classification_val_max.py
openbioseq/.mim/tools/summary/find_classification_val_median.py
openbioseq/.mim/tools/summary/find_regression_val_3times_average.py
openbioseq/apis/__init__.py
openbioseq/apis/train.py
openbioseq/core/__init__.py
openbioseq/core/hooks/__init__.py
openbioseq/core/hooks/addtional_scheduler.py
openbioseq/core/hooks/builder.py
openbioseq/core/hooks/deepcluster_hook.py
openbioseq/core/hooks/ema_hook.py
openbioseq/core/hooks/extractor.py
openbioseq/core/hooks/lr_scheduler.py
openbioseq/core/hooks/momentum_hook.py
openbioseq/core/hooks/odc_hook.py
openbioseq/core/hooks/optimizer_hook.py
openbioseq/core/hooks/precise_bn_hook.py
openbioseq/core/hooks/registry.py
openbioseq/core/hooks/save_hook.py
openbioseq/core/hooks/selfsup_metric_hook.py
openbioseq/core/hooks/swav_hook.py
openbioseq/core/hooks/validate_hook.py
openbioseq/core/optimizer/__init__.py
openbioseq/core/optimizer/adan.py
openbioseq/core/optimizer/builder.py
openbioseq/core/optimizer/constructor.py
openbioseq/core/optimizer/lamb.py
openbioseq/core/optimizer/lars.py
openbioseq/datasets/__init__.py
openbioseq/datasets/base.py
openbioseq/datasets/builder.py
openbioseq/datasets/classification.py
openbioseq/datasets/dataset_wrappers.py
openbioseq/datasets/deepcluster.py
openbioseq/datasets/extraction.py
openbioseq/datasets/multi_view.py
openbioseq/datasets/registry.py
openbioseq/datasets/regression.py
openbioseq/datasets/utils.py
openbioseq/datasets/data_sources/__init__.py
openbioseq/datasets/data_sources/bio_seq_source.py
openbioseq/datasets/data_sources/custom_source.py
openbioseq/datasets/data_sources/image_list.py
openbioseq/datasets/data_sources/vision_source.py
openbioseq/datasets/loader/__init__.py
openbioseq/datasets/loader/build_loader.py
openbioseq/datasets/loader/sampler.py
openbioseq/datasets/pipelines/__init__.py
openbioseq/datasets/pipelines/auto_augment.py
openbioseq/datasets/pipelines/compose.py
openbioseq/datasets/pipelines/image_transforms.py
openbioseq/datasets/pipelines/sequence_transforms.py
openbioseq/models/__init__.py
openbioseq/models/builder.py
openbioseq/models/registry.py
openbioseq/models/backbones/__init__.py
openbioseq/models/backbones/base_backbone.py
openbioseq/models/backbones/hugging_face_backbone.py
openbioseq/models/backbones/mim_vit.py
openbioseq/models/backbones/plain_cnn.py
openbioseq/models/backbones/resnet.py
openbioseq/models/backbones/seq_lstm.py
openbioseq/models/backbones/seq_transformer.py
openbioseq/models/backbones/timm_backbone.py
openbioseq/models/backbones/uniformer.py
openbioseq/models/backbones/van.py
openbioseq/models/backbones/vision_transformer.py
openbioseq/models/backbones/wide_resnet.py
openbioseq/models/classifiers/__init__.py
openbioseq/models/classifiers/base_model.py
openbioseq/models/classifiers/classification.py
openbioseq/models/classifiers/mixup_classification.py
openbioseq/models/heads/__init__.py
openbioseq/models/heads/cls_head.py
openbioseq/models/heads/cls_mixup_head.py
openbioseq/models/heads/contrastive_head.py
openbioseq/models/heads/latent_pred_head.py
openbioseq/models/heads/mim_head.py
openbioseq/models/heads/norm_linear_head.py
openbioseq/models/heads/reg_head.py
openbioseq/models/heads/swav_head.py
openbioseq/models/heads/vision_transformer_head.py
openbioseq/models/losses/__init__.py
openbioseq/models/losses/arcface_loss.py
openbioseq/models/losses/asymmetric_loss.py
openbioseq/models/losses/cross_entropy_loss.py
openbioseq/models/losses/focal_loss.py
openbioseq/models/losses/label_smooth_loss.py
openbioseq/models/losses/regression_loss.py
openbioseq/models/losses/utils.py
openbioseq/models/memories/__init__.py
openbioseq/models/memories/odc_memory.py
openbioseq/models/memories/simple_memory.py
openbioseq/models/necks/__init__.py
openbioseq/models/necks/conv_necks.py
openbioseq/models/necks/mim_neck.py
openbioseq/models/necks/mlp_necks.py
openbioseq/models/selfsup/__init__.py
openbioseq/models/selfsup/barlowtwins.py
openbioseq/models/selfsup/bert.py
openbioseq/models/selfsup/byol.py
openbioseq/models/selfsup/deepcluster.py
openbioseq/models/selfsup/mae.py
openbioseq/models/selfsup/moco.py
openbioseq/models/selfsup/mocov3.py
openbioseq/models/selfsup/npid.py
openbioseq/models/selfsup/odc.py
openbioseq/models/selfsup/simclr.py
openbioseq/models/selfsup/simmim.py
openbioseq/models/selfsup/simsiam.py
openbioseq/models/selfsup/swav.py
openbioseq/models/utils/__init__.py
openbioseq/models/utils/accuracy.py
openbioseq/models/utils/channel_shuffle.py
openbioseq/models/utils/gather_layer.py
openbioseq/models/utils/grad_weight.py
openbioseq/models/utils/helpers.py
openbioseq/models/utils/make_divisible.py
openbioseq/models/utils/scale.py
openbioseq/models/utils/se_layer.py
openbioseq/models/utils/smoothing.py
openbioseq/models/utils/transformer.py
openbioseq/models/utils/weight_init.py
openbioseq/models/utils/augments/__init__.py
openbioseq/models/utils/augments/fmix.py
openbioseq/models/utils/augments/mixup_input.py
openbioseq/models/utils/augments/mixup_saliency.py
openbioseq/models/utils/evaluation/__init__.py
openbioseq/models/utils/evaluation/eval_metrics.py
openbioseq/models/utils/evaluation/multilabel_eval_metrics.py
openbioseq/models/utils/visualization/__init__.py
openbioseq/models/utils/visualization/image.py
openbioseq/models/utils/visualization/plot_torch.py
openbioseq/third_party/__init__.py
openbioseq/third_party/clustering.py
openbioseq/third_party/distributed_sinkhorn.py
openbioseq/third_party/knn_classifier.py
openbioseq/third_party/svm_classifier.py
openbioseq/utils/__init__.py
openbioseq/utils/alias_multinomial.py
openbioseq/utils/collect.py
openbioseq/utils/collect_env.py
openbioseq/utils/config_tools.py
openbioseq/utils/contextmanagers.py
openbioseq/utils/dist_utils.py
openbioseq/utils/flops_counter.py
openbioseq/utils/fp16_utils.py
openbioseq/utils/gather.py
openbioseq/utils/logger.py
openbioseq/utils/misc.py
openbioseq/utils/profiling.py
openbioseq/utils/registry.py
openbioseq/utils/setup_env.py
requirements/docs.txt
requirements/mminstall.txt
requirements/readthedocs.txt
requirements/runtime.txt
requirements/tests.txt