.gitignore
LICENSE
README.rst
setup.py
data/5ss_motif.pdf
data/5ss_score.txt
data/5ss_seq.fa
data/intron.fa
data/intron_2ndstr.txt
doc/intronX_manual.rst
kit/anno_convert.py
kit/fasta_convert.py
kit/fastq_pair_split.py
kit/fastq_sample.py
kit/genome_dump.py
kit/genome_to_transcriptome.py
kit/intronSeq.py
kit/kmer_fetch.py
pyseqlib/__init__.py
pyseqlib/lariat_map.py
pyseqlib/motif_score.py
pyseqlib/pyRNAfold.py
pyseqlib/pymfold.py
pyseqlib/version.py
pyseqlib.egg-info/PKG-INFO
pyseqlib.egg-info/SOURCES.txt
pyseqlib.egg-info/dependency_links.txt
pyseqlib.egg-info/entry_points.txt
pyseqlib.egg-info/requires.txt
pyseqlib.egg-info/top_level.txt
pyseqlib/intronX/__init__.py
pyseqlib/intronX/intronX.py
pyseqlib/intronX/seq_maker.py
pyseqlib/plot/__init__.py
pyseqlib/plot/seq_plot.py
pyseqlib/utils/__init__.py
pyseqlib/utils/fasta.c
pyseqlib/utils/fasta.pyx
pyseqlib/utils/gtf.c
pyseqlib/utils/gtf.pyx
pyseqlib/utils/kmer.c
pyseqlib/utils/kmer.pyx
pyseqlib/utils/seq_map.c
pyseqlib/utils/seq_map.pyx
test/test.sh
tutorial/plot_gene.ipynb