LICENSE.txt
MANIFEST.in
README.rst
setup.cfg
setup.py
data/README.rst
data/_thermo_data.mat
data/thermoDBconverter.py
data/thermoData_Recon3.json
data/thermoData_Recon3.mat
data/thermo_data.mat
data/thermo_data.thermodb
models/.gitattributes
models/APASB_Model.mat
models/README.rst
models/bigg_iJO1366.COBRA-sbml3.xml
models/glycolysis.mat
models/gurobi.log
models/iJO1366.json
models/iJO1366.mat
models/small_ecoli.mat
models/small_yeast.mat
pytfa/__init__.py
pytfa.egg-info/PKG-INFO
pytfa.egg-info/SOURCES.txt
pytfa.egg-info/dependency_links.txt
pytfa.egg-info/requires.txt
pytfa.egg-info/top_level.txt
pytfa/analysis/__init__.py
pytfa/analysis/chebyshev.py
pytfa/analysis/manipulation.py
pytfa/analysis/sampling.py
pytfa/analysis/variability.py
pytfa/core/__init__.py
pytfa/core/model.py
pytfa/io/__init__.py
pytfa/io/base.py
pytfa/io/dict.py
pytfa/io/enrichment.py
pytfa/io/json.py
pytfa/io/plotting.py
pytfa/io/viz.py
pytfa/optim/__init__.py
pytfa/optim/config.py
pytfa/optim/constraints.py
pytfa/optim/debugging.py
pytfa/optim/meta.py
pytfa/optim/reformulation.py
pytfa/optim/relaxation.py
pytfa/optim/utils.py
pytfa/optim/variables.py
pytfa/redgem/__init__.py
pytfa/redgem/debugging.py
pytfa/redgem/lumpgem.py
pytfa/redgem/network_expansion.py
pytfa/redgem/redgem.py
pytfa/redgem/utils.py
pytfa/thermo/__init__.py
pytfa/thermo/equilibrator.py
pytfa/thermo/metabolite.py
pytfa/thermo/reaction.py
pytfa/thermo/std.py
pytfa/thermo/tmodel.py
pytfa/thermo/utils.py
pytfa/utils/__init__.py
pytfa/utils/logger.py
pytfa/utils/numerics.py
pytfa/utils/str.py