Metadata-Version: 2.1
Name: caddiepy
Version: 0.1.2
Summary: The python package to the Cancer Driver Drug Interaction Explorer (CADDIE)
Home-page: http://pypi.python.org/pypi/caddiepy/
Author: Maiykol
Author-email: michael.hartung@uni-hamburg.de
License: LICENSE
Description: <p align="center">
          <img alt="CADDIE Logo" src="https://github.com/Maiykol/caddiepy/blob/main/caddie_logo.png?raw=true" />
        </p>
        
        
        # caddiepy
        
        The python package to the Cancer Driver Drug Interaction Explorer (CADDIE). It  provides an interface for a variety of CADDIE functionalities, giving the user the possibility to execute tasks on CADDIE programmatically without using the website.
        
        
        # How to use
        
        ## Import
        Import the module:
        ```
        import caddiepy
        ```
        
        ## Examples
        N.B.: Required datasets for the examples will be downloaded upon execution and stored in the folder 'storage'.
        
        - Run the comparison of the CADDIE results against the Drug Sensitivity ranking of GDSC2 (https://www.cancerrxgene.org/) (this may take up to 5 hours):
        ```
        caddiepy.examples.GDSC_study.run(algorithm, gene_interaction_dataset, output_folder)
        ```
        
        ## Logging
        Configure the logging level like this:
        ```
        import logging
        logging.basicConfig(level=logging.INFO)
        ```
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: Programming Language :: Python :: 3.9
Description-Content-Type: text/markdown
