set(prefiltering_header_files
        mmseqs/prefiltering/cacheFriendlyOperations.h
        mmseqs/prefiltering/extendedSubstitutionMatrix.h
        mmseqs/prefiltering/indexer.h
        mmseqs/prefiltering/indexBuilder.h
        mmseqs/prefiltering/indexTable.h
        mmseqs/prefiltering/kmerGenerator.h
        mmseqs/prefiltering/prefiltering.h
        mmseqs/prefiltering/prefilteringIndexReader.h
        mmseqs/prefiltering/queryMatcher.h
        mmseqs/prefiltering/reducedMatrix.h
        mmseqs/prefiltering/sequenceLookup.h
        mmseqs/prefiltering/ungappedAlignment.h
        PARENT_SCOPE
        )

set(prefiltering_source_files
        mmseqs/prefiltering/cacheFriendlyOperations.cpp
        mmseqs/prefiltering/extendedSubstitutionMatrix.cpp
        mmseqs/prefiltering/indexer.cpp
        mmseqs/prefiltering/indexBuilder.cpp
        mmseqs/prefiltering/kmerGenerator.cpp
        mmseqs/prefiltering/main.cpp
        mmseqs/prefiltering/prefiltering.cpp
        mmseqs/prefiltering/prefilteringIndexReader.cpp
        mmseqs/prefiltering/queryMatcher.cpp
        mmseqs/prefiltering/reducedMatrix.cpp
        mmseqs/prefiltering/sequenceLookup.cpp
        mmseqs/prefiltering/ungappedAlignment.cpp
        mmseqs/prefiltering/ungappedprefilter.cpp
        PARENT_SCOPE
        )
