MANIFEST.in
requirements.txt
requirements_dev.txt
setup.cfg
setup.py
docs/README.md
docs/.gitbook/assets/screen-shot-2020-09-25-at-2.59.33-pm.png
docs/.gitbook/assets/screen-shot-2020-09-25-at-2.59.43-pm.png
docs/.gitbook/assets/screen-shot-2020-09-25-at-2.59.54-pm (1).png
docs/.gitbook/assets/screen-shot-2020-09-25-at-2.59.54-pm.png
sequence_qc/__init__.py
sequence_qc/cli.py
sequence_qc/noise.py
sequence_qc/noise_by_tlen.py
sequence_qc/plot_noise_by_tlen.py
sequence_qc/plots.py
sequence_qc.egg-info/PKG-INFO
sequence_qc.egg-info/SOURCES.txt
sequence_qc.egg-info/dependency_links.txt
sequence_qc.egg-info/entry_points.txt
sequence_qc.egg-info/not-zip-safe
sequence_qc.egg-info/requires.txt
sequence_qc.egg-info/top_level.txt
tests/.DS_Store
tests/__init__.py
tests/test_sequence_qc.py
tests/test_data/SeraCare_0-5.bai
tests/test_data/SeraCare_0-5.bam
tests/test_data/SeraCare_0-5.bam.bai
tests/test_data/SeraCare_0-5.sam
tests/test_data/SeraCare_0-5_tmp.bam
tests/test_data/SeraCare_0-5_tmp.bam.bai
tests/test_data/SeraCare_noise_positions.tsv
tests/test_data/readme.md
tests/test_data/ref.fa
tests/test_data/ref.fa.fai
tests/test_data/ref_nochr.fa
tests/test_data/ref_nochr.fa.fai
tests/test_data/test.bed
tests/test_data/test_noise_by_substitution.tsv
tests/test_data/test_noise_by_tlen.tsv
tests/test_data/test_noise_positions.tsv
tests/test_data/test_tlen.tsv