LICENSE
README.md
setup.py
pySeqRNA.egg-info/PKG-INFO
pySeqRNA.egg-info/SOURCES.txt
pySeqRNA.egg-info/dependency_links.txt
pySeqRNA.egg-info/entry_points.txt
pySeqRNA.egg-info/requires.txt
pySeqRNA.egg-info/top_level.txt
pyseqrna/__init__.py
pyseqrna/__main__.py
pyseqrna/aligners.py
pyseqrna/arg_parser.py
pyseqrna/clustering.py
pyseqrna/differential_expression.py
pyseqrna/gene_ontology.py
pyseqrna/multimapped_groups.py
pyseqrna/normalize_counts.py
pyseqrna/pathway.py
pyseqrna/pyseqrna_plots.py
pyseqrna/pyseqrna_stats.py
pyseqrna/pyseqrna_utils.py
pyseqrna/quality_check.py
pyseqrna/quality_trimming.py
pyseqrna/quantification.py
pyseqrna/report.py
pyseqrna/ribosomal.py
pyseqrna/version.py
pyseqrna/param/STAR.ini
pyseqrna/param/bowtie2.ini
pyseqrna/param/fastqc.ini
pyseqrna/param/featureCount.ini
pyseqrna/param/flexbar.ini
pyseqrna/param/hisat2.ini
pyseqrna/param/htseq.ini
pyseqrna/param/trim_galore.ini
pyseqrna/param/trimmomaticPE.ini
pyseqrna/param/trimmomaticSE.ini