biopandas
biopython
bioservices
click
deepdiff
matplotlib>=3.4.3
multipledispatch
networkx
numpy
pandas
plotly
pydantic
seaborn
pyyaml<6.*,>=5.1
scikit-learn
scipy
tqdm
typing_extensions
wget
xarray

[all]
pytest-cov
pandoc
flake8
hypothesis
pre-commit
pydocstyle
pytest
black
pycodestyle
pytest-xdist
nbval
isort
interrogate
nbstripout

[dev]
black
flake8
hypothesis
interrogate
isort
nbstripout
nbval
pandoc
pre-commit
pycodestyle
pydocstyle
pytest
pytest-cov
pytest-xdist

[extras]
black
flake8
hypothesis
interrogate
isort
nbstripout
nbval
pandoc
pre-commit
pycodestyle
pydocstyle
pytest
pytest-cov
pytest-xdist
