LICENSE
README.md
pyproject.toml
setup.cfg
setup.py
src/serena/__init__.py
src/serena/ensemble_variation.py
src/serena/local_minima_variation.py
src/serena/switchyness_score.py
src/serena/analysis/__init__.py
src/serena/analysis/ensemble_analysis.py
src/serena/analysis/investigator.py
src/serena/analysis/judge_pool.py
src/serena/analysis/scoring.py
src/serena/analysis/switch_acceptance.py
src/serena/interfaces/Sara2_API_Python3.py
src/serena/interfaces/__init__.py
src/serena/interfaces/eterna_interface.py
src/serena/interfaces/nupack4_0_28_wsl2_interface.py
src/serena/interfaces/vienna2_fmn_hack_interface.py
src/serena/tests/__init__.py
src/serena/tests/conftest.py
src/serena/tests/entry_point/__init__.py
src/serena/tests/entry_point/test_entry_ensemble_variation.py
src/serena/tests/entry_point/test_entry_groups.py
src/serena/tests/entry_point/test_entry_structures.py
src/serena/tests/entry_point/test_switchyness_score.py
src/serena/tests/utilities/__init__.py
src/serena/tests/utilities/test_comparison_structures.py
src/serena/tests/utilities/test_ensemble_groups.py
src/serena/tests/utilities/test_ensemble_variation.py
src/serena/tests/utilities/test_local_minima_variation.py
src/serena/tests/utilities/test_multiple_ensemble_groups.py
src/serena/tests/utilities/test_nupack4_interface.py
src/serena/tests/utilities/test_sara_secondary_structure.py
src/serena/tests/utilities/test_sara_secondary_structure_lists.py
src/serena/tests/utilities/test_weighted_structures.py
src/serena/utilities/__init__.py
src/serena/utilities/comparison_structures.py
src/serena/utilities/ensemble_groups.py
src/serena/utilities/ensemble_structures.py
src/serena/utilities/ensemble_variation.py
src/serena/utilities/local_minima_variation.py
src/serena/utilities/logging_serena.py
src/serena/utilities/plots.py
src/serena/utilities/report_generation.py
src/serena/utilities/thread_manager.py
src/serena/utilities/weighted_structures.py
src/serena_rna_tool.egg-info/PKG-INFO
src/serena_rna_tool.egg-info/SOURCES.txt
src/serena_rna_tool.egg-info/dependency_links.txt
src/serena_rna_tool.egg-info/requires.txt
src/serena_rna_tool.egg-info/top_level.txt