Metadata-Version: 2.1
Name: scatrex
Version: 0.0.2
Summary: Mapping single-cell transcriptomes to copy number evolutionary trees
Home-page: https://github.com/cbg-ethz/SCATrEx
Author: Pedro F. Ferreira
Author-email: pedro.miguel.ferreira.pf@gmail.com
License: UNKNOWN
Project-URL: Bug Tracker, https://github.com/cbg-ethz/SCATrEx/issues
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.8
Description-Content-Type: text/markdown
License-File: LICENSE

<div align="left">
  <img src="https://github.com/cbg-ethz/SCATrEx/raw/main/figures/scatrex.png", width="300px">
</div>

[![pypi](https://img.shields.io/pypi/v/scatrex.svg)](https://pypi.python.org/pypi/scatrex)

Map single-cell transcriptomes to copy number evolutionary trees. Check out the [tutorial](https://github.com/cbg-ethz/SCATrEx/blob/main/notebooks/tutorial.ipynb) for more information.

## Installation
```
$ pip install scatrex
```

SCATrEx uses [JAX](https://github.com/google/jax) to perform automatic differentiation. By default, SCATrEx installs the CPU-only version of JAX, but we strongly recommend the use of GPU acceleration. Please follow the instructions in https://github.com/google/jax#pip-installation-gpu-cuda to install the GPU version of JAX.


