Metadata-Version: 2.1
Name: WGDI
Version: 0.4.0
Summary: Whole Genome Duplication Identification
Home-page: https://github.com/SunPengChuan/wgdi
Author: Pengchuan Sun
Author-email: sunpengchuan@gmail.com
License: BSD License
Description: # WGDI
        
        [![Latest PyPI version](https://img.shields.io/pypi/v/wgdi.svg)](https://pypi.python.org/pypi/wgdi)
        
        | | |
        | --- | --- |
        | Author  | Pengchuan Sun ([sunpengchuan](https//github.com/sunpengchuan)) |
        | Email   | <sunpengchuan@gmail.com> |
        | License | [BSD](http://creativecommons.org/licenses/BSD/) |
        
        ## Description
        
        Finely identify the whole genome duplication events and generate the genomic homology tables. This is a gold standard for complex genomic analysis,including the construction of homologous gene dotplot, event-related genomic alignment, and synonymous substitutions, and differences in different evolution rates, etc.
        
        ## Installation
        
        Python package and command line interface (CLI) for the analysis of whole genome duplications (WGDs). 安装需要的环境是python3. 
        
        ```bash
        pip3 install wgdi
        ```
        
        For **external software** requirements: please consult the relevant section in the docs: <https://wgdi.readthedocs.io/en/latest/index.html#external-software>
        
        To use as a Python package as well as to find additional documentation and examples for the CLI, please consult the docs at<http://wgdi.readthedocs.io/en/latest/>
        
        
        
        ## Third party software
        
        paml
        
        mafft
        
        muscle
        
        pal2nal
Platform: UNKNOWN
Classifier: Intended Audience :: Science/Research
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: BSD License
Classifier: Operating System :: OS Independent
Description-Content-Type: text/markdown
