COPYRIGHT
LICENSE
MANIFEST.in
README.md
requirements.txt
setup.cfg
setup.py
spatialpy/__init__.py
spatialpy/__version__.py
spatialpy.egg-info/PKG-INFO
spatialpy.egg-info/SOURCES.txt
spatialpy.egg-info/dependency_links.txt
spatialpy.egg-info/requires.txt
spatialpy.egg-info/top_level.txt
spatialpy/core/__init__.py
spatialpy/core/boundarycondition.py
spatialpy/core/cleanup.py
spatialpy/core/datafunction.py
spatialpy/core/domain.py
spatialpy/core/geometry.py
spatialpy/core/initialcondition.py
spatialpy/core/lattice.py
spatialpy/core/model.py
spatialpy/core/parameter.py
spatialpy/core/reaction.py
spatialpy/core/result.py
spatialpy/core/spatialpyerror.py
spatialpy/core/species.py
spatialpy/core/timespan.py
spatialpy/core/transformation.py
spatialpy/core/visualization.py
spatialpy/core/vtkreader.py
spatialpy/solvers/__init__.py
spatialpy/solvers/build_expression.py
spatialpy/solvers/solver.py
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/propensity_file_template.cpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/build/Makefile
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/Copyright.txt
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/License.txt
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/Make-config
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/Makefile
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/ReadMe.txt
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/MS_Win32/Ann.sln
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/MS_Win32/Makefile
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/MS_Win32/ann2fig/ann2fig.vcproj
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/MS_Win32/dll/dll.vcproj
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/MS_Win32/sample/sample.vcproj
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/MS_Win32/test/test.vcproj
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/ann2fig/Makefile
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/ann2fig/ann2fig.cpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/doc/ANNmanual.pdf
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/include/ANN/ANN.h
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/include/ANN/ANNperf.h
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/include/ANN/ANNx.h
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/sample/Makefile
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/sample/ann_sample.cpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/sample/data.pts
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/sample/query.pts
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/sample/sample.save
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/src/ANN.cpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/src/Makefile
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/src/Makefile.spatialpy
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/src/bd_fix_rad_search.cpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/src/bd_pr_search.cpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/src/bd_search.cpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/src/bd_tree.cpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/src/bd_tree.h
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/src/brute.cpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/src/kd_dump.cpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/src/kd_fix_rad_search.cpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/src/kd_fix_rad_search.h
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/src/kd_pr_search.cpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/src/kd_pr_search.h
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/src/kd_search.cpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/src/kd_search.h
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/src/kd_split.cpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/src/kd_split.h
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/src/kd_tree.cpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/src/kd_tree.h
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/src/kd_util.cpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/src/kd_util.h
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/src/perf.cpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/src/pr_queue.h
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/src/pr_queue_k.h
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/test/Makefile
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/test/ann_test.cpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/test/rand.cpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/test/rand.h
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/test/test1-data.pts
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/test/test1-query.pts
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/test/test1.in
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/test/test1.save
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/test/test2-data.pts
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/test/test2-query.pts
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/test/test2.in
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/external/ANN/test/test2.save
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/include/NRMConstant_v5.hpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/include/count_cores.h
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/include/model.h
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/include/output.h
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/include/particle.hpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/include/particle_system.hpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/include/propensities.hpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/include/pthread_barrier.h
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/include/read_lammps_input_file.h
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/include/simulate.hpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/include/simulate_rdme.hpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/src/NRMConstant_v5.cpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/src/count_cores.c
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/src/model.c
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/src/output.c
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/src/particle.cpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/src/pthread_barrier.c
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/src/read_lammps_input_file.c
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/src/simulate.cpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/src/simulate_rdme.cpp
spatialpy/solvers/c_base/ssa_sdpd-c-simulation-engine/src/simulate_threads.c
spatialpy/stochss/__init__.py
spatialpy/stochss/stochss_export.py
test/test_mincde.py
test/test_model.py
test/test_solver.py
test/test_threads.py